Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22d02
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    29   0.70 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.92 
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    29   0.92 
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   6.5  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   8.6  

>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 13/42 (30%), Positives = 29/42 (69%)
 Frame = -2

Query: 544 FTNKNIFSQVSSFRYTFESGKLVEVSEKFDRSAFSNSNITDF 419
           F+N N  S +++   T E+G+L ++++ FD +A +N ++++F
Sbjct: 480 FSN-NDTSIITTLESTDETGRLRQLAKLFDHNAIANGSLSNF 520


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 615  ATVYINTTTGTEYNLSSPNGCKDWKHINNLFIEHENSLQHRE 740
            A +Y       + N SSP+  +D+K +  L+ E +N +Q  E
Sbjct: 2162 AKIYCMFAQFCDNNYSSPDLTEDFKRMEKLYFEKKNDIQQLE 2203


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +2

Query: 341 ELITASLESVSVSPDPGTYCDDILPEEV 424
           EL+ ++ +S+S +P P ++ +D +PEE+
Sbjct: 270 ELVDSTAKSISFNPFPVSFLNDPIPEEI 297


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 372 DTLSKLAVINSQKLEVDGQKLEIKVQHLMCTYMSF 268
           D ++++AV N  K+E+DG K +    HL  T  ++
Sbjct: 7   DAINEVAVSNKDKIELDGIKDDSFDGHLSITEATY 41


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 302 LISSFCPSTSSFCELITASLESVSVSPDPGTYCD 403
           LIS  C +    CE I  +LE  SVS D   + D
Sbjct: 242 LISRSCFNDDQACERIRKNLEQCSVSQDVLEFID 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,080
Number of Sequences: 5004
Number of extensions: 53269
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)