Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22d02
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797           38   0.011
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730     29   5.1  
09_02_0296 + 7041463-7042351,7042450-7042606,7042758-7042839,704...    29   5.1  
11_06_0513 + 24466131-24469487                                         28   6.8  
08_02_1018 + 23640889-23641245,23641868-23641954,23642063-236421...    28   6.8  
03_05_0096 + 20754478-20754584,20755548-20755677,20756212-207562...    28   6.8  
11_06_0421 + 23331702-23331723,23332161-23332197,23333397-233335...    28   9.0  
03_05_0920 - 28812796-28813325,28814019-28816377                       28   9.0  

>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
          Length = 918

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 27/69 (39%), Positives = 38/69 (55%)
 Frame = +2

Query: 383 DPGTYCDDILPEEVRDI*IRKGRPVELLRNFYKFSRFKCITKTRYLTKNIFIRKLTNGES 562
           DP T+  + L    RDI I KG P+   R F     F   +  R+ +   + RKL+NGE 
Sbjct: 187 DPRTW--ENLDNRGRDILIEKG-PI---REFNLL--FPSDSSGRHFSYAYYSRKLSNGEV 238

Query: 563 LERKWLLYS 589
           ++RKWL+YS
Sbjct: 239 IDRKWLVYS 247



 Score = 35.5 bits (78), Expect = 0.045
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +3

Query: 654 NLSSPNGCKDWKHINNLFIEHENSLQH 734
           +L + +G KDWKH++    +HENS++H
Sbjct: 268 SLLASDGLKDWKHLSGRLKQHENSVEH 294


>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
          Length = 802

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 669 NGCKDWKHINNLFIEHENSLQH 734
           +G +DW+H++    EHE S+ H
Sbjct: 171 DGFRDWRHVSERLKEHEVSVDH 192


>09_02_0296 +
           7041463-7042351,7042450-7042606,7042758-7042839,
           7043082-7043120
          Length = 388

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 533 FIRKLTNGESLERKWLLYSPAKKSV 607
           + R L+NG+  +R WL+YS    SV
Sbjct: 72  YTRNLSNGDEYDRDWLVYSKELDSV 96


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 393 VPGSGDTDT-LSKLAVINSQKLEVDGQKLEIK-VQHLMCTYMSF 268
           +PGS    T L  L ++ +QK+ + GQK EIK +    C Y+++
Sbjct: 575 LPGSLTAHTDLRTLILLRTQKMVLSGQKSEIKEIPSDYCRYLTY 618


>08_02_1018 +
           23640889-23641245,23641868-23641954,23642063-23642161,
           23642255-23642456,23642569-23642690,23642942-23643226
          Length = 383

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 488 RFKCITKTRYLTKNIFIRKLTNGESLERKWLLYS 589
           R + +T   Y+  + F+RKL +G +  R WLL S
Sbjct: 208 RMQAVTPFSYI--DYFLRKLNSGNAAPRSWLLRS 239


>03_05_0096 +
           20754478-20754584,20755548-20755677,20756212-20756268,
           20756741-20756794,20757610-20758287
          Length = 341

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 669 NGCKDWKHINNLFIEHENSLQH 734
           +G +DW+HI+    EH+ S++H
Sbjct: 249 DGFRDWRHISERLKEHKASVKH 270


>11_06_0421 +
           23331702-23331723,23332161-23332197,23333397-23333533,
           23333675-23334241,23335068-23335777,23335915-23336102,
           23336489-23336918
          Length = 696

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 443 KGRPVELLRNFYKFSRFKCI 502
           KG P+EL+   +KFSR +C+
Sbjct: 677 KGLPLELIAEIFKFSRQECL 696


>03_05_0920 - 28812796-28813325,28814019-28816377
          Length = 962

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = -1

Query: 446 LFEFKYHGLLPVKCRH------SKYQGQETQIHSLSSQLLIHRSLK 327
           LFE+K H L P++ +          +G E  +HSL+ Q  IHR LK
Sbjct: 694 LFEWKEHNLRPLEWKKRLSIALDVARGVE-YLHSLAQQTFIHRDLK 738


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,679,295
Number of Sequences: 37544
Number of extensions: 283688
Number of successful extensions: 658
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)