Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22d02
         (740 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL355001-1|CAI16178.1|  493|Homo sapiens zinc finger, MYM-type 5...    40   0.009
AL354808-2|CAI41001.1|  493|Homo sapiens zinc finger, MYM-type 5...    40   0.009

>AL355001-1|CAI16178.1|  493|Homo sapiens zinc finger, MYM-type 5
           protein.
          Length = 493

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 31/84 (36%), Positives = 41/84 (48%)
 Frame = +2

Query: 356 SLESVSVSPDPGTYCDDILPEEVRDI*IRKGRPVELLRNFYKFSRFKCITKTRYLTKNIF 535
           S+  V +S DPGT+   IL  + RD  +    P   +RNF     F      R  ++  +
Sbjct: 336 SIVPVVLSADPGTW-PRILNIKQRDTLVENVPPQ--VRNF----NFPKDNTGRKFSETYY 388

Query: 536 IRKLTNGESLERKWLLYSPAKKSV 607
            R L NGE   R WLLYS +K SV
Sbjct: 389 TRILPNGEKTTRSWLLYSTSKDSV 412



 Score = 37.5 bits (83), Expect = 0.050
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 657 LSSPNGCKDWKHINNLFIEHENSLQH 734
           L + NGCKDW+H++++  +HE S  H
Sbjct: 427 LKNENGCKDWQHLSHILSKHEESEMH 452


>AL354808-2|CAI41001.1|  493|Homo sapiens zinc finger, MYM-type 5
           protein.
          Length = 493

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 31/84 (36%), Positives = 41/84 (48%)
 Frame = +2

Query: 356 SLESVSVSPDPGTYCDDILPEEVRDI*IRKGRPVELLRNFYKFSRFKCITKTRYLTKNIF 535
           S+  V +S DPGT+   IL  + RD  +    P   +RNF     F      R  ++  +
Sbjct: 336 SIVPVVLSADPGTW-PRILNIKQRDTLVENVPPQ--VRNF----NFPKDNTGRKFSETYY 388

Query: 536 IRKLTNGESLERKWLLYSPAKKSV 607
            R L NGE   R WLLYS +K SV
Sbjct: 389 TRILPNGEKTTRSWLLYSTSKDSV 412



 Score = 37.5 bits (83), Expect = 0.050
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 657 LSSPNGCKDWKHINNLFIEHENSLQH 734
           L + NGCKDW+H++++  +HE S  H
Sbjct: 427 LKNENGCKDWQHLSHILSKHEESEMH 452


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,281,890
Number of Sequences: 237096
Number of extensions: 1599404
Number of successful extensions: 3111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3111
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)