Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22c24
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.8  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   1.8  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    27   3.2  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   7.3  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   7.3  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   9.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   9.7  

>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/53 (22%), Positives = 30/53 (56%)
 Frame = -1

Query: 465 LIKCTKSWRIVVRPCIAVNVSIHIRLKSQKTSDFNLSTETLAQHLTGNTTQRV 307
           L +C+++W++  R  + +  ++  +  SQ TS+F      ++    G+++Q+V
Sbjct: 578 LKECSQTWKLAQRSIVLIENTLKGKTNSQSTSEF---VSPISDTENGSSSQQV 627


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 356 DKLKSDVFWDFNRMCIETFTAIHGRTTMRHDL 451
           DK+  D  W   R  +E    IH R  M  DL
Sbjct: 742 DKIPVDEMWRLFRQILEALAYIHSRGMMHRDL 773


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 332 RCWARVSVDKLKSDVFWDFNRMCIETFTAIHGRTTMRHDLV 454
           R   +  + +L+SD +  F +  +ET++A+H  +++   LV
Sbjct: 601 RLLLKKEIGQLESDDYIQFEKEFLETYSALHNTSSLLPGLV 641


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 90   EQWQTK*STVIFRARLLCENKQIND 164
            E W+TK S VIF  +L   N   ND
Sbjct: 1568 EDWETKASIVIFVKKLALANPAHND 1592


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 395 MCIETFTAIHGRTTMRHDLVHF 460
           +C+  F +  G T ++H LVHF
Sbjct: 40  LCLTCFQSGCGETGLKHSLVHF 61


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 379 KNVRLQFINRNSGPTSHR 326
           KN+  Q+I R+  PTSHR
Sbjct: 89  KNIPDQYIGRSPRPTSHR 106


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -3

Query: 445 VAHSSAPVYSGERFNTHSIKVPKNVRLQFINRNSGPTSHREHDTAGVRLRAISCSLRIAF 266
           + HS   V SGE  +  S +V + +   +++            T   R+ AIS + R+AF
Sbjct: 590 IQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKDLQ-TVVCTQPRRISAISLAERVAF 648

Query: 265 QTGTSAALSVG 233
           +  T+    VG
Sbjct: 649 ERDTTVGKEVG 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,432
Number of Sequences: 5004
Number of extensions: 54454
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)