Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22c22
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    29   0.81 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.3  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    25   7.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.6  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 401 FHCLISLVFQPSFTTF--SMFLTDFILLNSLQIGCYENFFFTNSFVSMVMLSSFKQQNII 228
           ++ L +L+    FT F  ++FL   I+L +L+I  YE  F T     + + SSF  + + 
Sbjct: 294 YNTLHNLLADGDFTLFHFTLFLLSKIILLNLKISDYEKAFSTLQQALLFLTSSFFNEFVQ 353

Query: 227 N 225
           N
Sbjct: 354 N 354


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -1

Query: 335 FILLNSLQIGCYENFFFTNSFVSMVMLSSFKQQNIINITF*ICSGPITCWMV*FVGIGFC 156
           F +L+SL        F  + F   +++++    +II + F +CS     W   F+  GFC
Sbjct: 506 FSILDSLWFHPLYFMFGFSFFCFGILVTTCIMVSIITVYFQLCSENYNWWWRSFITPGFC 565


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 173 QIKPSNRLWALNKFK 217
           Q+  SNRL ALNKFK
Sbjct: 318 QLSQSNRLGALNKFK 332


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 184 IQQVMGPEQI*KVIFIIFCCLKDDNITMETKLFVKK 291
           ++  + P+QI KVI + F  L DD  T   +    K
Sbjct: 418 VRMELSPQQIYKVILLYFSILMDDFYTSAIQAMATK 453


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 302  YENFFFTNSFVSMVMLSSFKQQ 237
            Y  +FF  + V M +L SFKQQ
Sbjct: 1800 YFGYFFKTNRVEMEVLDSFKQQ 1821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,063
Number of Sequences: 5004
Number of extensions: 42109
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)