Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22c19
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 31 0.21
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 29 0.83
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 28 1.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.1
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 27 3.4
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo... 26 4.4
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 26 4.4
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 26 5.9
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 5.9
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 7.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.8
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 25 7.8
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 25 7.8
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 460 RRLAAKEQEIQDYVSQITELKSSHASLNGRSTLLDPAV 573
RR A +I+D+VS++ L+S H SLN + L + V
Sbjct: 308 RRQAKTVNQIRDFVSKLGSLQSEHTSLNIHTGLAETLV 345
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.7 bits (61), Expect = 0.83
Identities = 26/105 (24%), Positives = 46/105 (43%)
Frame = +1
Query: 331 DSYIDHLEKLNKQLEGGLEKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQI 510
++ ++ L+K NKQ LE+ + K S + L +A KEQ + Q+
Sbjct: 579 EATLNALQKQNKQKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVADKEQTLAQLHLQL 638
Query: 511 TELKSSHASLNGRSTLLDPAVNVLILRLKQELTSTKARLEETQNE 645
E+ SL+ S AV+ L L+ ++ ++K +L E
Sbjct: 639 DEMTQRLVSLDEES----KAVSQRKLDLEYKINNSKTQLATATEE 679
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 517 LKSSHASLNGRSTLLDPAVNVLILRLKQELTSTKARLE----ETQNELSAWKFTPD 672
L S + L + P + ++ +L QEL++ LE ET ELS +F PD
Sbjct: 186 LSSRNGYLTSEERKIAPNLYKILKKLAQELSNGNGDLEKLIAETNTELSRCRFIPD 241
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +1
Query: 400 IEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQITELKSSHASLNGRSTLLDPAVNV 579
++D++ Q +H+E VL +++ EQ++Q +Q E ++ + L + L +
Sbjct: 50 LKDQLVLQEVNHEHKENVLTKKINFLEQQLQSSNNQAEESRNLISVLRNENESLKTNLEN 109
Query: 580 LILRLKQELTSTKARLEETQNEL 648
R LT+ L +EL
Sbjct: 110 QNKRF-DALTTENQSLRRANSEL 131
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/48 (22%), Positives = 29/48 (60%)
Frame = +1
Query: 385 EKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQITELKSS 528
+K +E ED++KQ E + R + + L ++ ++ D+ +++ + K++
Sbjct: 410 QKVQEKEDRLKQSENELRTRHREMKAALEKQKADLIDHKNRLMQAKAA 457
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Frame = +1
Query: 349 LEKLNKQLEGGLEKA-KEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQ-------DYVS 504
L+ + L+ LEK +E+E+++ Q+ + + R + ++ A Q+IQ +
Sbjct: 511 LKNNSADLKAQLEKQPQELENRLLQEISILKQRNQKFLKNNATSIQQIQYLDEELGKTLK 570
Query: 505 QITELKSSHASL 540
Q+ +LK HA L
Sbjct: 571 QLNDLKEKHAQL 582
>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +1
Query: 25 PRRLFFVLVTVYL---AFIYNE**TKSVKVFIDISLTNK*N 138
PRR FF+ +TV L AF+Y S+ F+D+ L +K N
Sbjct: 9 PRRFFFLFLTVGLIAGAFLY------SLIYFVDVDLVSKVN 43
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +1
Query: 364 KQLEGGLEKAKEIEDKIKQQYAESQHREKVLVRR---------LAAKEQEIQDYVSQITE 516
K L LE + + + +KQ SQH E++L R L E EI SQ+ +
Sbjct: 51 KVLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKFRIAKLLNITENEIMSLESQLQK 110
Query: 517 LKSSHASLNGR 549
+K L R
Sbjct: 111 MKEQLLQLEER 121
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/81 (24%), Positives = 41/81 (50%)
Frame = +1
Query: 412 IKQQYAESQHREKVLVRRLAAKEQEIQDYVSQITELKSSHASLNGRSTLLDPAVNVLILR 591
+++ +A+S+ + + + LAA EQ++Q+ +L+ S ++ S++ +N
Sbjct: 184 LEKLFADSREQLETKCKELAAAEQQLQELSVHNQQLEESIKQVS--SSIELEKINAEQRL 241
Query: 592 LKQELTSTKARLEETQNELSA 654
EL KA EE +LS+
Sbjct: 242 QISELEKLKAAQEERIEKLSS 262
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 5.9
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Frame = +1
Query: 328 QDSYIDHLEKLNKQLEGGLE-KAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVS 504
Q S + + + +++ LE K +E D+I E+ K L RR++ E +++Y S
Sbjct: 310 QGSCTEKILRFKEKILDLLEMKQQEENDRISHIEYENDLTVKKLKRRISELEMAVKEYES 369
Query: 505 Q--ITELKSSHASLNGRSTLLDPAVNVLILR---LKQELT--STKARLEE 633
+ +E + + R L D + +LR LK+E ST +LEE
Sbjct: 370 EKSYSEKEYEEKISSLRIELEDKLAEIDMLRNKLLKEEHKHHSTSEKLEE 419
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 352 EKLNKQLEGGLEKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQITELKSSH 531
E L+++L +E+ ++DK YA HR + L R+ E ++ S EL H
Sbjct: 29 EILSQKLVAAIERQAALDDK----YATEVHRNEALSERIRELEAKLSAKKSFDEELVKFH 84
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 7.8
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Frame = +1
Query: 322 KSQDSYIDHLEKLNKQLEGGLEKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYV 501
K+Q+ I+ L +L KQL+ + ++ E+K+ + E Q RE V ++Q+YV
Sbjct: 497 KTQEQSIE-LTRLYKQLQ---DIEEDYENKLMRM--EQQWREDV---------DQLQEYV 541
Query: 502 SQIT-ELKSSHASLNGRSTLLD---PAVNVLILRLKQELTSTKARLEETQNELSAWK 660
+IT EL+ + L+ S D V L ++E+ + + E + +S +K
Sbjct: 542 EEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISLFK 598
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 322 KSQDSYIDHLEKLNKQLEGGLEKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQE 486
K ++S ++ L N+Q+ LEK K ++ ++++ Q + + + L+ E E
Sbjct: 292 KHEESQVELLRTHNRQMTETLEKYKSLDFNMEKEGDVIQQLKSSIKKPLSGAEDE 346
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 205 GALSPRTLHSYTFRDISNLFNKNFTYSLMI 116
GAL TL FR ++F K YS+MI
Sbjct: 113 GALLHHTLGDGDFRTFMDMFKKVSAYSIMI 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,843
Number of Sequences: 5004
Number of extensions: 46004
Number of successful extensions: 165
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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