Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22c19
(686 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 30 0.079
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 27 0.42
CR954256-5|CAJ14146.1| 615|Anopheles gambiae predicted protein ... 27 0.73
DQ989013-1|ABK97614.1| 378|Anopheles gambiae gustatory receptor... 26 1.3
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein. 25 2.2
AJ439353-11|CAD27933.1| 615|Anopheles gambiae 30E5.11 protein. 25 3.0
AY939827-1|AAY18208.1| 680|Anopheles gambiae CTCF-like protein ... 24 5.2
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. 23 6.8
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 23 9.0
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 29.9 bits (64), Expect = 0.079
Identities = 25/111 (22%), Positives = 49/111 (44%)
Frame = +1
Query: 319 WKSQDSYIDHLEKLNKQLEGGLEKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDY 498
WK + + L+ ++L+ G+ AKE K+++Q A Q R LV ++
Sbjct: 810 WKKHEQDFETLKLEIEELQKGIVTAKEQAVKLEEQIAALQQR---LVEVSGTTDEMTAAV 866
Query: 499 VSQITELKSSHASLNGRSTLLDPAVNVLILRLKQELTSTKARLEETQNELS 651
+ ++K +N +S L + LKQ K +++ +NE++
Sbjct: 867 TALKQQIKQHKEKMNSQSKELKAKYHQRDKLLKQN-DELKLEIKKKENEIT 916
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 27.5 bits (58), Expect = 0.42
Identities = 15/74 (20%), Positives = 34/74 (45%)
Frame = +1
Query: 382 LEKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQITELKSSHASLNGRSTLL 561
+EK KE + +KQ+ A + + +A +E+Q ++ + S A++ R +
Sbjct: 873 IEKDKEKIELMKQEKAAHKTLVDQMEEEMAKARREVQALAKELAAIHQSIANIESRIESM 932
Query: 562 DPAVNVLILRLKQE 603
++++ K E
Sbjct: 933 KSKRQTILMQAKME 946
>CR954256-5|CAJ14146.1| 615|Anopheles gambiae predicted protein
protein.
Length = 615
Score = 26.6 bits (56), Expect = 0.73
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 264 HSDGVRVTTTGAAFTRCLTMALCLLG 187
H + V T A+F C+T A C+LG
Sbjct: 482 HRRQLGVPTKNASFRNCVTSAACVLG 507
>DQ989013-1|ABK97614.1| 378|Anopheles gambiae gustatory receptor
24 protein.
Length = 378
Score = 25.8 bits (54), Expect = 1.3
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = +1
Query: 34 LFFVLVTVYLAFI 72
LFF+L+TVY+AFI
Sbjct: 43 LFFLLLTVYIAFI 55
>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
Length = 1201
Score = 25.0 bits (52), Expect = 2.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 340 IDHLEKLNKQLEGGLEKAKEIEDKIKQQYAESQHREKVLV 459
I H KL L+ + K E+E KI Q++ ES + +V +
Sbjct: 410 ISHQNKLQDDLKKDIAKQGELEKKI-QEHTESFEQLRVQI 448
>AJ439353-11|CAD27933.1| 615|Anopheles gambiae 30E5.11 protein.
Length = 615
Score = 24.6 bits (51), Expect = 3.0
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 382 LEKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQITE-LKSSHASL 540
L + EIED + Q Y E Q + + + ++D Q+ + L+ A+L
Sbjct: 321 LRRESEIEDALLQIYCEGQQNIASFKQAIHVNKHRLRDNSHQLVDALERQRAAL 374
>AY939827-1|AAY18208.1| 680|Anopheles gambiae CTCF-like protein
protein.
Length = 680
Score = 23.8 bits (49), Expect = 5.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -2
Query: 499 HNPEFLAPWQRASEQVLSLC 440
HNP+++AP +A + C
Sbjct: 406 HNPDYVAPTPKAKTHICPTC 425
>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
Length = 1133
Score = 23.4 bits (48), Expect = 6.8
Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +1
Query: 340 IDHLEKLNKQLEGGLEKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQITEL 519
++H + +L+ G+E+ + D++++ + + + + A E EI + I +
Sbjct: 788 LEHSRTILAKLQKGIEEEQAKLDQVRRTVQQEEQTAQAKKDAMGAVEAEIARIQASIDKE 847
Query: 520 KSSHASLNGRSTLLDPAV---NVLILRLKQELTSTKARLEETQNELSAWKFTPDSN 678
+ + L + A+ + K+ + A LE+ + E S PD +
Sbjct: 848 QQARHDLQTNHKVKQQALKRSTESMEERKRTRVALSAALEQARQEASEKGERPDES 903
>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
Length = 1376
Score = 23.0 bits (47), Expect = 9.0
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +1
Query: 349 LEKLNKQLEGGLEKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQITELKSS 528
+E+ ++E + E+E K+ A + KVL+ + E+ + + E KS+
Sbjct: 427 IEESEAKIESLTRQKTEVEAKLTANLATLKDETKVLLEEKEKLQTELIELKRAVDESKSA 486
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,290
Number of Sequences: 2352
Number of extensions: 11245
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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