Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22c15
         (704 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32376-1|AAB04949.1|  870|Homo sapiens channel associated protei...    33   0.99 
AK126776-1|BAC86685.1|  749|Homo sapiens protein ( Homo sapiens ...    33   1.3  
AF244355-1|AAG31443.1|  121|Homo sapiens secretin protein.             31   5.3  

>U32376-1|AAB04949.1|  870|Homo sapiens channel associated protein of
            synapse protein.
          Length = 870

 Score = 33.1 bits (72), Expect = 0.99
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
 Frame = +1

Query: 43   VISYKMNNKTYYDEQFF-LDKYNSNINNCKKRKHDHRIFEHNSNCKLIDLNTNAKRVIEV 219
            VIS +   K   + +F    +YN N+     +     + E   +C ++D++ NA + ++V
Sbjct: 729  VISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRF-VAERGKHC-ILDVSGNAIKRLQV 786

Query: 220  HDSNGINNKIKTREITD--EINVHNTEACSTETYKQLVDVPTELNEYLIDI--GKCAEK- 384
                 I   IK R +    E+N   TE  + +TY + + +  E  EY   I  G   E  
Sbjct: 787  AQLYPIAIFIKPRSLESLMEMNKRLTEEQAKKTYDRAIKLEQEFGEYFTAIVQGDTLEDI 846

Query: 385  STYCRPAIDYYSQAFVF 435
               C+  I+  S  F++
Sbjct: 847  YNQCKLVIEEQSGPFIW 863


>AK126776-1|BAC86685.1|  749|Homo sapiens protein ( Homo sapiens cDNA
            FLJ44824 fis, clone BRACE3046491, highly  similar to
            Channel associated protein of synapse-110. ).
          Length = 749

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
 Frame = +1

Query: 43   VISYKMNNKTYYDEQFF-LDKYNSNINNCKKRKHDHRIFEHNSNCKLIDLNTNAKRVIEV 219
            VIS +   K   + +F    +YN N+     +     + E   +C ++D++ NA + ++V
Sbjct: 608  VISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRF-VAERGKHC-ILDVSGNAIKRLQV 665

Query: 220  HDSNGINNKIKTREITD--EINVHNTEACSTETYKQLVDVPTELNEYLIDI--GKCAEK- 384
                 I   IK R +    E+N   TE  + +TY + + +  E  EY   I  G   E  
Sbjct: 666  AQLYPIAIFIKPRSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFGEYFTAIVQGDTLEDI 725

Query: 385  STYCRPAIDYYSQAFVF 435
               C+  I+  S  F++
Sbjct: 726  YNQCKLVIEEQSGPFIW 742


>AF244355-1|AAG31443.1|  121|Homo sapiens secretin protein.
          Length = 121

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 442 MSRNARLQRLLKNIVVSRQKERAED--AWKQYINELKCKHGYN 564
           +   ARLQRLL+ +V  R ++ AE+  AW +    L C  G N
Sbjct: 40  LREGARLQRLLQGLVGKRSEQDAENSMAWTRLSAGLLCPSGSN 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,623,969
Number of Sequences: 237096
Number of extensions: 1752824
Number of successful extensions: 4243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4243
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)