Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22c11
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0076 + 25381814-25381880,25382927-25382967,25383398-253835...    35   0.065
01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803...    32   0.46 
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589...    28   5.6  

>05_06_0076 +
           25381814-25381880,25382927-25382967,25383398-25383502,
           25383612-25383695,25384069-25384103,25384562-25384647,
           25385529-25385594,25385936-25385970
          Length = 172

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 35/137 (25%), Positives = 44/137 (32%), Gaps = 2/137 (1%)
 Frame = +3

Query: 144 MPRGKFTNHKGRNRKFTSPEELEEQRKHDEQK--KKWRKEQXXXXXXXXXXXXXXXXXXX 317
           M RGKF       R F+S E++         K  KK + E+                   
Sbjct: 1   MARGKFKGKPTGERSFSSEEQIAAGTSAGRPKNFKKKQSEKEVYDRRQESDEEYDRSQES 60

Query: 318 XXXXXXXXHPTKAKGVSGLIEVENPNRVVXXXXXXXXXXXXGDVEKPQLSXXXXXXXXXX 497
                      K KG  GLIE+ENPN +V            G      LS          
Sbjct: 61  DEEESDNFQKNKHKGTEGLIEIENPN-LVKPKNIKAKDIDIG--RTSDLSRREREELEKQ 117

Query: 498 XXXXXYQKLHAEGKTEQ 548
                + KL  +GKTEQ
Sbjct: 118 KSHERHMKLQEQGKTEQ 134


>01_06_0735 -
           31579201-31579208,31579402-31579467,31580222-31580307,
           31580396-31580430,31580586-31580669,31580754-31580843,
           31581267-31581304,31582042-31582108
          Length = 157

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = +3

Query: 351 KAKGVSGLIEVENPNRVVXXXXXXXXXXXXGDVEKPQLSXXXXXXXXXXXXXXXYQKLHA 530
           K KG  GLI++ENPN +V            G  +  +LS               Y KL  
Sbjct: 66  KHKGTEGLIQIENPN-LVKAKNIKAKEVDLG--KTTELSRREREEIEKQKAHERYMKLQE 122

Query: 531 EGKTEQ 548
           +GKTEQ
Sbjct: 123 QGKTEQ 128


>01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,
            5891941-5892073,5892629-5892732,5892867-5895780,
            5895876-5895965,5896251-5896355,5896633-5896740,
            5896826-5896876
          Length = 1334

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 499  EQLQPIRSFTLKVKRSKRALTSLDSPSFANNA 594
            E LQ IRS T  ++R+  + T+  SP+ AN++
Sbjct: 1274 ELLQQIRSKTFNLRRTNASKTNTSSPTTANSS 1305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,924,771
Number of Sequences: 37544
Number of extensions: 123664
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)