Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22c08
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867...    29   2.0  
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    29   2.0  
09_04_0500 - 18120287-18122233                                         28   2.7  
06_01_0943 + 7258740-7258809,7258883-7259100,7260023-7260558,726...    28   3.6  
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617...    27   4.7  
11_03_0128 - 10437407-10438049,10438097-10438272                       27   6.2  
08_02_1080 - 24197514-24199415                                         27   6.2  
05_07_0005 + 26997352-26998674                                         27   8.2  

>08_02_0157 -
           13385589-13385675,13386187-13386357,13386572-13386792,
           13390090-13390240,13390682-13390726,13391121-13391330
          Length = 294

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 271 WVXRLTDHLTTASNGSDSSSRGT 203
           WV  L + +TTASN  D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185


>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 418 TANSLQSS*RPRCHDXERSSTRALRPYSSEERR 320
           T +   +S RPR  D E  ++  L PYSSE++R
Sbjct: 446 TDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478


>09_04_0500 - 18120287-18122233
          Length = 648

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 303 AVSVPERRSSDEYGRRARVELRSXSWHR 386
           AV+V +R  S EY   +R E RS SW R
Sbjct: 2   AVAVLDRSFSSEYPASSRTEGRSCSWKR 29


>06_01_0943 +
           7258740-7258809,7258883-7259100,7260023-7260558,
           7260915-7261698
          Length = 535

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 134 WQGILALEGLV--VLGPEXWSEXSVLNWSQKIYIVGMV*GLLL 12
           W G+ ++  L+  VL    W   S +  S  +Y+VG++ GL L
Sbjct: 62  WSGVTSMLPLLTAVLADSYWDRYSTITASSLLYVVGLI-GLTL 103


>06_01_0816 -
           6171189-6171255,6171277-6171441,6172037-6172618,
           6173451-6173761
          Length = 374

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 110 GLVVLGPEXWSEXSVLNWSQK 48
           G VV GP  W E  +  WSQ+
Sbjct: 42  GRVVAGPYCWQEIDIQEWSQQ 62


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 220 SSSRGTEYSXTCRTARRAYSKARMACDTGGKAS 122
           S S  +  S TCRT  RA   +   C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164


>08_02_1080 - 24197514-24199415
          Length = 633

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 303 AVSVPERRSSDEYGRRARVELRSXSWHR 386
           AV+VP+   ++ Y  + ++E RS SW R
Sbjct: 2   AVAVPDHTFNNGYSSKNQIEGRSLSWKR 29


>05_07_0005 + 26997352-26998674
          Length = 440

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 380 PRRGAKLNARSTSILVRGASLGNG 309
           P+ G +LNA S +I+++GA L +G
Sbjct: 156 PKLGVRLNAVSYNIILKGACLRDG 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,838,863
Number of Sequences: 37544
Number of extensions: 149700
Number of successful extensions: 367
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)