Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22c08
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    29   1.4  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    29   1.4  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    27   7.3  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    26   9.7  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 301 TLSPFPSDAPLTSMDVERALSFAPRRGTA 387
           T SP PSD    S+DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 301 TLSPFPSDAPLTSMDVERALSFAPRRGTA 387
           T SP PSD    S+DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 247 LTTASNGSDSSSRGTEYSXT--CRTARRAYSKARMACDTGGKAS 122
           ++  S G  SSSRG+ Y  T   R+++R+ S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 5   FSSKANLKPYRQYKSSGTSSIPXFHSXLQDLKQPSLQEPRCLATRVTGH 151
           F  + +L+P R    + TSS P     L DLK  +LQ   C  + +  H
Sbjct: 827 FKDQTSLQPTRCTMHAATSSCPDGFECLSDLKD-ALQGYCCSVSEICPH 874


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
            ZK370.4b protein.
          Length = 1353

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 357  VELRSXSWHRGLQELWR 407
            VE R+ SW  G+  LWR
Sbjct: 993  VETRAASWFNGMSSLWR 1009


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
            ZK370.4a protein.
          Length = 1342

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 357  VELRSXSWHRGLQELWR 407
            VE R+ SW  G+  LWR
Sbjct: 982  VETRAASWFNGMSSLWR 998


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,735,787
Number of Sequences: 27780
Number of extensions: 109447
Number of successful extensions: 300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)