Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22c03
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    28   0.52 
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   1.2  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   2.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   2.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   2.1  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   4.8  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    25   6.4  
SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subu...    24   8.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   8.5  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 28.3 bits (60), Expect = 0.52
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
 Frame = +2

Query: 86  VLEKDENCNIY---YEDLLKFL--DFQTRPVFNLTE---DDYQKVVRHAPPLKDTECKLW 241
           +LEK    N+    Y  LLK L  DF  R  F  T    +DY+  V+H   L    C+L+
Sbjct: 480 LLEKTSVINLIMALYVKLLKSLARDFPARSPFEATSQKTNDYELEVQH---LFTWTCELY 536

Query: 242 AENENLIQEGYVNWNA 289
           +EN N +   ++  N+
Sbjct: 537 SENFNTVISSFIIANS 552


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 8   APERLRQLLRAHRLTINTDLMDCMLQV 88
           +PE L +L++  +L IN D  D +LQ+
Sbjct: 199 SPEYLEELIKDDKLVINGDNKDILLQI 225


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 47  LTINTDLMDCMLQVLEKDENCNIYYEDLL 133
           +T+  DLMD M + LE+D+   +   +LL
Sbjct: 570 VTVGPDLMDVMKRCLERDQRKRLTIPELL 598


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 224  TECKLWAENENLIQEGYVNWN 286
            ++C+ WA   NLI   Y  WN
Sbjct: 1848 SDCRSWARKANLISLVYYAWN 1868


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 224  TECKLWAENENLIQEGYVNWN 286
            ++C+ WA   NLI   Y  WN
Sbjct: 1848 SDCRSWARKANLISLVYYAWN 1868


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = -1

Query: 265 LDEILVFGPQFALSIFQRWRVPDDLLIIILRQIEHWSSLEIQKLQQIFIVNVTVFVLFQY 86
           L  +  FG    L+ F  W +  DL + + R ++H  S     +     V + VF +  +
Sbjct: 222 LSAMFTFGWLLILAAFHLWNLLGDLSVPMYRIVKHLFSYIFYLIGVPITVYLAVFAVHSH 281

Query: 85  LQH 77
           + +
Sbjct: 282 IAY 284


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 20/82 (24%), Positives = 38/82 (46%)
 Frame = +2

Query: 14  ERLRQLLRAHRLTINTDLMDCMLQVLEKDENCNIYYEDLLKFLDFQTRPVFNLTEDDYQK 193
           E++++L  A++ T++  +    +Q  E ++   IY  D L             T+ ++  
Sbjct: 81  EKVKELENANK-TLSDLVRRIQIQRDEAEQKAEIYNRDALN------------TKQEHLD 127

Query: 194 VVRHAPPLKDTECKLWAENENL 259
           + +      +T CKL  ENENL
Sbjct: 128 IKKRLEKSDETVCKLKEENENL 149


>SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subunit
           Apc13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 170 LTEDDYQKVVRHAPPLKDTECKLWAENENLI 262
           L  DD +  V H PP+ + E  +   + NLI
Sbjct: 27  LPVDDVEVRVEHLPPVTEDEMTIQHSSANLI 57


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 374  DSNPNYQKYKCKSKIVLSQ 318
            D NP  + YKC   I LSQ
Sbjct: 1517 DINPEQRTYKCNLSISLSQ 1535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,541
Number of Sequences: 5004
Number of extensions: 38599
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)