Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22c03
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1010 - 10215625-10216335,10216372-10216473                       30   0.88 
01_03_0124 + 12734846-12735356,12735449-12736041                       27   6.2  
01_01_0821 + 6399890-6400397,6400474-6401066                           27   6.2  
07_01_0454 + 3443871-3444024,3444268-3444356,3445482-3445557,344...    27   8.2  
06_01_0589 + 4235361-4235433,4236484-4237187,4237584-4237805,423...    27   8.2  

>08_01_1010 - 10215625-10216335,10216372-10216473
          Length = 270

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 15 SACDSCSAPTDSLSTPTSWTACC 83
          S+C SCSA  DS S+  S   CC
Sbjct: 6  SSCASCSAAADSFSSSASSCCCC 28


>01_03_0124 + 12734846-12735356,12735449-12736041
          Length = 367

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 39  PTDSLSTPTSWTACCKYWKRTKTVT 113
           P+ S   P SW  CC  W+ +  VT
Sbjct: 138 PSPSPIPPRSWLPCCVDWRSSGAVT 162


>01_01_0821 + 6399890-6400397,6400474-6401066
          Length = 366

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +3

Query: 33  SAPTDSLSTPTSWTACCKYWKRTKTVTFT--MKIC*SFW 143
           +AP      P SW  CC  W+ +  VT     + C S W
Sbjct: 135 AAPPPCPIPPDSWLPCCVDWRSSGAVTGVKFQRSCASCW 173


>07_01_0454 +
           3443871-3444024,3444268-3444356,3445482-3445557,
           3445875-3445880,3445984-3446131,3446237-3446394,
           3446473-3446676,3446803-3447038,3447227-3447439,
           3447984-3448082,3448262-3448371,3448581-3448655,
           3449407-3449485,3449563-3449709,3449785-3449865,
           3449975-3450094,3450580-3450702,3451382-3451459,
           3451586-3451674,3451760-3451868,3452117-3452227,
           3452557-3452612,3452697-3452874,3452971-3453072,
           3453160-3453231,3453350-3453415,3453502-3453567,
           3453676-3453759,3454638-3454754,3455753-3455827,
           3455912-3455995,3456138-3456179
          Length = 1148

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 205 VPDDLLIIILRQIEHWSSLEIQKLQQIFIVNVTVFVLFQYLQHAVHEVGVD 53
           VP  L+ I  RQ+ H+ SLE  K     +     F   + ++    ++GVD
Sbjct: 824 VPSFLVYIRNRQVVHFRSLEKPKEDDFCLEMSKAFTYDEVVEKVAQKLGVD 874


>06_01_0589 +
           4235361-4235433,4236484-4237187,4237584-4237805,
           4237900-4238559
          Length = 552

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 310 QVELAQECIPVDVAFLDEILVFGPQFALSIFQRWRVPDDLLIIILRQIE 164
           Q ++  ECI +D  F  E++VF   F ++      + D+LL++   QI+
Sbjct: 274 QGDVVMECISLDENFEHEVMVFRVMFNMAF-----IEDNLLLLDRDQID 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,624,197
Number of Sequences: 37544
Number of extensions: 240268
Number of successful extensions: 621
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)