Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22c03
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.46 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.61 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.9  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    23   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.46
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 80  LQVLEKDENCNIYYEDLLKFLDFQTRPVFNLTE 178
           L++ E + +    Y+DLL   +   RPV N TE
Sbjct: 25  LKIFEANPDTKRLYDDLLSNYNRLIRPVMNNTE 57


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 334 RLFFHKMFQVELAQECIPVDVAFLDEILVF 245
           R F+HK  Q+EL +E I  D   +   L F
Sbjct: 153 RHFYHKELQIELVREEILFDTVHVTFKLTF 182


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 131 LKFLDFQTRPVFNLTEDDYQKVVRHAPPLKDTECKLWAE 247
           L+F    TR  +    D Y+K+ +  PPL      LW E
Sbjct: 273 LRFGCLSTRLFYYQLTDLYKKIKKAVPPLSLHGQLLWRE 311


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 119 YEDLLKFLDFQTRPVFNLTEDDYQKVVRHAPPLKDTECKLWAENENL 259
           Y+DLL   +   RPV N+T+    K+      L D   K      NL
Sbjct: 29  YDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNL 75


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 158 PVFNLTEDDYQKVVRHAPPLKDTECK 235
           PV  LTE++    ++   P K+TE K
Sbjct: 39  PVVELTENNGLYTLKTTSPFKNTEIK 64


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 278 NWNAFLCQLNLEHLVKEQS 334
           ++ AFL  LN EH + ++S
Sbjct: 294 DYQAFLKHLNTEHTLDDRS 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,850
Number of Sequences: 438
Number of extensions: 2618
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)