Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22c02
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0268 + 21435231-21435240,21435330-21435558,21435778-214358... 40 0.002
05_01_0459 - 3637741-3637995,3638078-3638204,3641273-3641495,364... 38 0.009
04_04_0015 + 22164889-22165000,22165135-22165167,22165992-221662... 37 0.012
07_01_0891 - 7447079-7447330,7447431-7447554,7449571-7449793,744... 36 0.037
03_06_0465 - 34130083-34130340,34130421-34130541,34131158-341311... 36 0.037
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 34 0.11
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994... 34 0.11
01_06_1602 - 38559661-38559936,38560008-38560137,38562550-385627... 33 0.26
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 32 0.34
12_02_1174 - 26696869-26698191 31 1.1
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 30 1.8
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 29 2.4
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 29 2.4
02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319 29 2.4
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 29 4.2
09_04_0506 - 18188785-18190599 28 5.6
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 28 5.6
02_05_0546 + 29889861-29890182,29891057-29892798 28 5.6
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352... 28 7.4
07_03_1269 - 25339970-25340086,25340357-25340416,25341494-253415... 28 7.4
06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832 28 7.4
01_05_0490 + 22672241-22674679 28 7.4
01_03_0184 + 13560830-13562981,13563604-13564088 28 7.4
12_02_0058 + 13015401-13016654 27 9.8
06_03_0089 - 16475677-16476309 27 9.8
>02_04_0268 +
21435231-21435240,21435330-21435558,21435778-21435898,
21435992-21436264
Length = 210
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 146 CKICMQTVCNKNGLQCQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCAS 310
C C +T N C VC++W H C++ TP K + IK CP C+S
Sbjct: 157 CGACGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQ------YKCPGCSS 205
>05_01_0459 -
3637741-3637995,3638078-3638204,3641273-3641495,
3641592-3641624,3641716-3641854
Length = 258
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 200 VCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCASVEP 319
VC+RW H C+K TP K + IK CP C+S P
Sbjct: 223 VCERWYHGKCVKITPAKAESIKQ------YKCPSCSSKRP 256
>04_04_0015 +
22164889-22165000,22165135-22165167,22165992-22166220,
22166709-22166826,22166910-22167188
Length = 256
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +2
Query: 77 ESKFNV*NENKMNRTCNSKVKNPCKICMQTVCNKNGLQCQGVCKRWAHYACLKYTPGKIQ 256
++K+ N + N + + C C + N C +C+ W H C++ TP K +
Sbjct: 180 QAKYEEENGGRGNGGDEDQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAE 239
Query: 257 DIK 265
IK
Sbjct: 240 HIK 242
>07_01_0891 -
7447079-7447330,7447431-7447554,7449571-7449793,
7449891-7449923,7450042-7450144
Length = 244
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 200 VCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCAS 310
+C+RW H C++ TP K + IK CPDC+S
Sbjct: 208 ICERWFHGKCVRITPAKAEHIKH------YKCPDCSS 238
>03_06_0465 -
34130083-34130340,34130421-34130541,34131158-34131186,
34132259-34132382,34132594-34132816,34132948-34132980,
34133106-34133208
Length = 296
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 200 VCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCAS 310
+C+RW H C++ TP K + IK CPDC+S
Sbjct: 258 ICERWFHGKCVRITPAKAEHIKH------YKCPDCSS 288
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 191 CQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCA 307
C +C++W H C+K TP K + IK CP C+
Sbjct: 227 CCDICEKWFHGKCVKITPAKAEHIKQ------YKCPSCS 259
>05_04_0339 +
20397591-20397627,20398494-20398526,20399210-20399438,
20402055-20402184,20402251-20402532
Length = 236
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 191 CQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCAS 310
C C+RW H C+K TP + + IK CPDC +
Sbjct: 198 CCDSCERWYHGKCVKITPARAEHIKH------YKCPDCGN 231
>01_06_1602 -
38559661-38559936,38560008-38560137,38562550-38562778,
38563627-38563659,38563746-38563896
Length = 272
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 191 CQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCAS 310
C C++W H C+K TP + + IK CPDC +
Sbjct: 234 CCDNCEKWYHGKCVKITPARAEHIKQ------YKCPDCTN 267
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 146 CKIC-MQTVCNKNGL-QCQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDC 304
C C + V KN + C G+C R H CL P +DI G +CP DC
Sbjct: 317 CAACGSKDVTLKNDIILCDGICDRGFHQYCLN-PPLLAEDIPQGDEGWLCPACDC 370
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 482 PCGPNPPCVSPKQTQNEPKCPPPSFKNPS 568
P P PP V P Q +P+ PPPS + PS
Sbjct: 162 PPPPRPPSVKPPVVQPKPQ-PPPSLQPPS 189
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 464 ESLHNIPCGPNPPCVSPKQTQNEPKCPPPSFKNPSVKHSCGP 589
+ LH+ P PP +P T P PPP+ + P H P
Sbjct: 49 QQLHSPDSPPPPPLPTPTVTTPTPPPPPPAPRPPRRHHRIPP 90
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 473 HNIPCGPNPPCVSPKQTQNEPKCPPPS 553
H P P PP P TQ P PPP+
Sbjct: 44 HRAPSPPRPPPPPPPPTQPAPPPPPPA 70
>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
Length = 138
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 482 PCGPNPPCVSPKQTQNEPKCPPPSFKNPSVKHSCGPDNQC 601
P P P PK+ P CPPP +SC P QC
Sbjct: 76 PEAPKKPDDPPKKPDPPPPCPPPPPPCCPGCNSCRPACQC 115
>02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319
Length = 133
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 289 SMSRLCFGRAESQRKSSMQNEKKFRKAF*GLC*SFNKETKANTSGASSTVTMLLFRICRI 468
+MSR+C E ++N + F K F G C FN ++ A++ + CR+
Sbjct: 28 AMSRICRCYHECLPNCGLRNSRSFCKVFCGSCCVFNPVHNCTSTDAAAAAPAIAGDDCRM 87
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = +2
Query: 482 PCGPNPPCVSPKQTQNEPKCPPPSFKNPSVKHSCGPDNQCVTRGSNAKVQQNEAKT 649
P PP SP EP PPPS P + + TR + + ++ + T
Sbjct: 164 PSPTGPPTPSPTNPNLEPSPPPPSSSAPPSRTPSNSSDGPTTRDNISSSKKQNSST 219
>09_04_0506 - 18188785-18190599
Length = 604
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 567 EGFLKDGGGHFGSF*VCFGLTQGGFGPHG 481
+GF + GGG++G + G GG GP G
Sbjct: 156 DGFHRQGGGNYGGGPIVVGNGGGGDGPGG 184
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +2
Query: 125 NSKVKNPCKICMQTVCNKNGLQC-QGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPD 301
+S +PC IC+ T C + C C + A Y C T I+ + PCP
Sbjct: 314 SSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYLCA--TASSSTSIRG--VPGSIPCPL 369
Query: 302 C 304
C
Sbjct: 370 C 370
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 146 CKICMQTVCNKNGLQCQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDC 304
C+IC + + L C++ AH CL++ K G+ K CP C
Sbjct: 209 CQICKVAIMDMESLLVCDACEKGAHLKCLQHYGNK------GVPKAEWHCPTC 255
>11_01_0456 +
3522599-3523921,3524005-3524027,3524097-3525265,
3525373-3525737
Length = 959
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = +1
Query: 211 MGSLRLPEIHSWKNSGYQSWLNKNYLSMSRLCFGRAESQRKSSMQNEKKFRK 366
+GSL+ ++ N+ + ++ + ++S+LCF + S+ +S N K+ K
Sbjct: 411 LGSLKHLQVLGLFNNNFTGFIPPSLSNLSQLCFPQQSSRWTTSCGNAKQLSK 462
>07_03_1269 -
25339970-25340086,25340357-25340416,25341494-25341574,
25341647-25341801,25341894-25341978,25342106-25342174,
25342410-25342489,25342620-25342665,25342743-25342838,
25342921-25343031,25343141-25343344,25343430-25343632,
25344495-25344711
Length = 507
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 144 LARFACRQFAIKMACSAKVFAKDGLITPA*NTLLEKFRI 260
+ RF C F ++A K F+ DG + P ++KF +
Sbjct: 130 IERFDCSTFPTRIAGEIKSFSTDGWVAPKLARRMDKFML 168
>06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832
Length = 118
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +2
Query: 497 PPCVSPKQ---TQNEPKCPPPSFKNPSVKHSCGP 589
PP V+P +++ P+ P P KNP H GP
Sbjct: 63 PPAVTPSDDDPSRHGPRDPIPDPKNPPPSHRVGP 96
>01_05_0490 + 22672241-22674679
Length = 812
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 482 PCGPNPPCVSPKQTQNEPKCPPPSFKNPSVKHSCGPD 592
P P PP P ++ E + PP +P+ + PD
Sbjct: 695 PLPPPPPPPPPPMSEGEEEAPPSVTASPAPAYCASPD 731
>01_03_0184 + 13560830-13562981,13563604-13564088
Length = 878
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 127 ITCSVHFIFISNIKFTFVWLAFC 59
++CSV ++F+ NI F+F A C
Sbjct: 346 VSCSVFWLFVLNILFSFAGTACC 368
>12_02_0058 + 13015401-13016654
Length = 417
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 479 IPCGPNPPCVSPKQTQNEPKCPPP 550
+P P PP P TQ P PPP
Sbjct: 180 VPAAPAPPRQVPVVTQQAPPPPPP 203
>06_03_0089 - 16475677-16476309
Length = 210
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 485 CGPNPPCVSPKQTQNEPKCPPPSFKNPSVKHSCGPDNQ 598
C P P + ++ N P PPP + V+HS P Q
Sbjct: 85 CRPPRPSICTRR--NSPATPPPDPEEEEVRHSSRPAAQ 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,585,307
Number of Sequences: 37544
Number of extensions: 375437
Number of successful extensions: 1373
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -