Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22c02
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 36 0.019
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr... 31 0.54
AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical... 31 0.54
U55365-6|AAN84868.1| 338|Caenorhabditis elegans Nuclear hormone... 30 1.2
AY204182-1|AAO39186.1| 338|Caenorhabditis elegans nuclear recep... 30 1.2
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 1.6
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 2.9
AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical... 29 2.9
Z77131-3|CAB00855.1| 156|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC024877-13|AAF60901.2| 710|Caenorhabditis elegans Nematode ast... 29 3.8
Z81515-4|CAB04196.1| 739|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical... 28 6.6
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +2
Query: 479 IPCGPNPPCVSPKQTQ-NEPKCPPPSFKNPSVKHSCGPD--NQCVTRGSNAKV 628
+P P+ P S ++Q K P +FK ++HS PD N+CV+ SNA +
Sbjct: 620 VPMNPSLPVSSHSESQVRSTKKLPSNFKEDDIRHSTCPDNCNKCVSEKSNADI 672
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Frame = +2
Query: 485 CGPNP---PCVSPKQTQNEPKCPPPSFKNPS----VKHSCGPDNQC 601
CGP+P PC P P CPPP PS K + P+N C
Sbjct: 100 CGPSPVPAPCCPPPPAPAAPCCPPPPPPTPSPLVCCKQAPVPENPC 145
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 110 MNRTCNSKVK-NPCK-ICMQTVCNKNGLQCQGVC 205
+NR C S K PCK +C T CN+ C VC
Sbjct: 366 INRRCRSNEKFEPCKTVCSDTKCNEEPRFCPQVC 399
>Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical
protein Y69H2.3a protein.
Length = 537
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 110 MNRTCNSKVK-NPCK-ICMQTVCNKNGLQCQGVC 205
+NR C S K PCK +C T CN+ C VC
Sbjct: 471 INRRCRSNEKFEPCKTVCSDTKCNEEPRFCPQVC 504
>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical protein
ZK593.4 protein.
Length = 1477
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 179 NGLQCQGVCKRWAHYACLKYTPGKIQDI 262
N + C+ CK W H CL +T +I D+
Sbjct: 1428 NWVMCEAGCKNWFHVICLGFTLREINDM 1455
>AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical
protein Y116A8C.22 protein.
Length = 286
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 101 ENKMNRTCNSKVKNPCKICMQTVCNKNGLQCQGVCKRWAHYAC 229
E ++N+ ++K + C IC T+ +KNG C++W H C
Sbjct: 227 EPEINQKKDTKQVHVCPIC--TLASKNGTCLCTKCQKWVHLKC 267
>U55365-6|AAN84868.1| 338|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 94, isoform a protein.
Length = 338
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 98 NENKMNRTCNSKVKN-PCKICMQTVCNKNGLQCQGVCKRWAH 220
N K + CN + + PC+ C +C KNG+ V ++ H
Sbjct: 32 NSPKQLKKCNCEAERAPCRYCRMKMCVKNGMMITKVQQKRDH 73
>AY204182-1|AAO39186.1| 338|Caenorhabditis elegans nuclear receptor
NHR-94 protein.
Length = 338
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 98 NENKMNRTCNSKVKN-PCKICMQTVCNKNGLQCQGVCKRWAH 220
N K + CN + + PC+ C +C KNG+ V ++ H
Sbjct: 32 NSPKQLKKCNCEAERAPCRYCRMKMCVKNGMMITKVQQKRDH 73
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 479 IPCGPNPPCVSPKQTQNEPKCPPPS--FKNPSVKH 577
+P P+ +P+Q Q +P PPP +++P+ +H
Sbjct: 30 VPPAPDASMPTPQQQQQQPNLPPPQQPYEHPAQQH 64
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 485 CGPNPPCVSPKQTQNEPKCPPPSFKNPS 568
C P P C P P CPPP PS
Sbjct: 56 CPPPPMCPPPPPPPPPPMCPPPPPPMPS 83
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 479 IPCGPNPPCVSPKQTQNEPKCPPP 550
+PC P PP P+ P CPPP
Sbjct: 43 LPCPP-PPICPPQFCPPPPMCPPP 65
>AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical
protein F32D1.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 482 PCGPNPPCVSPKQTQNEPKCPPPS 553
P PP SPK +N+P P PS
Sbjct: 256 PSSKQPPKKSPKSNKNDPNAPGPS 279
>Z77131-3|CAB00855.1| 156|Caenorhabditis elegans Hypothetical
protein C54C6.4 protein.
Length = 156
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 118 SVHFIFISNIKFTFVWLAFCKLC 50
S+H+ +SNI+ TF ++ FC C
Sbjct: 102 SLHYFCMSNIRMTFSFVYFCFFC 124
>AC024877-13|AAF60901.2| 710|Caenorhabditis elegans Nematode
astacin protease protein30 protein.
Length = 710
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 107 KMNRTCNSKVKNPCKICMQTVCNKNGLQCQGVCKRW 214
K RTCN KVK+P ++ V + QC CK +
Sbjct: 486 KGKRTCNWKVKSPSGGRVRLVLTELRYQCAPACKAY 521
>Z81515-4|CAB04196.1| 739|Caenorhabditis elegans Hypothetical
protein F26H11.4 protein.
Length = 739
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 476 NIPCGPNPPCVSPKQTQNEPK-CPPPSFKNPSV--KHS 580
++PC P PP +S ++ PK C P+ KN S KHS
Sbjct: 183 SLPCPPPPPPLSERKKNVGPKPCVGPAQKNLSSQRKHS 220
>AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical
protein C46E10.9 protein.
Length = 393
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 62 KCQPNESKF-NV*NENKMNRTCNSKVKNPCKICMQTVCNKNGLQ 190
KC+ E +F N N N+ + + C IC QT+ +N LQ
Sbjct: 211 KCEICEKQFANKPNLNRHRKIHSGTKSKKCNICQQTLHRENRLQ 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,603,881
Number of Sequences: 27780
Number of extensions: 349898
Number of successful extensions: 1220
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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