Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b24
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    29   0.65 
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   6.1  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    25   6.1  

>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 385 NLFYCEDETVTYNCELENDAQLVQILENVCTQLFSFYRSKEIQLQRFTLQFIPTLIY--N 558
           N+F  E++   Y C  +    + ++L+    Q F F    EI+ + F+ Q  P L+   N
Sbjct: 5   NVFRLEEKR--YKCRADTIPDMSEVLDPNDPQSFGFEALVEIKPRVFSFQKAPGLLILKN 62

Query: 559 YLSSVAQ 579
           Y+SS  Q
Sbjct: 63  YVSSELQ 69


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +1

Query: 280 LITEWLNEYTSLQENEVQSFAAEHEHNHEIATAIFNLFYCEDETVTYNCELENDAQLVQI 459
           ++ EW  EY +  +N++       +   E  T   NL     ET     E EN       
Sbjct: 210 IVWEWKEEYHNRIKNQMSRLGGSFDWTREAFTMDENLSRAVVETFVRLHE-ENIIYRANR 268

Query: 460 LENVCTQLFSFYRSKEIQ 513
           L N CT L +   + E++
Sbjct: 269 LVNWCTALQTTLSNLEVE 286


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +1

Query: 310 SLQENEVQSFAAEHEHNHEIATAIFNLFYCEDETVTYNCELENDAQ 447
           SL   E      EHE  HE    +  L+     TV Y C    DA+
Sbjct: 145 SLSSGETMLQFPEHEEQHECNREMEQLYESASSTV-YPCSFWEDAE 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,956
Number of Sequences: 5004
Number of extensions: 41945
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)