Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b24
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97012-12|AAK39146.1|  310|Caenorhabditis elegans Serpentine rec...    28   5.5  
AF045640-1|AAC02572.2|  121|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U97012-12|AAK39146.1|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein18 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 272 HSDISVDKRRLSKHKRFQSL*LTF**FFFACTYIINLILSCASIYF 135
           HS  S    R S+ K  +SL      FFF C++ +++IL   ++YF
Sbjct: 203 HSSTSTKTSRSSEVKLLKSLATLI--FFFICSWTMSVILFHVAMYF 246


>AF045640-1|AAC02572.2|  121|Caenorhabditis elegans Hypothetical
           protein C11D2.3 protein.
          Length = 121

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 352 EHNHEIATAIFNLFYCEDETVTYNCELENDAQLV 453
           + N++I+ A+  L  C + T  Y C L+N  Q++
Sbjct: 9   QQNNKISEALGCLAVCNEVTEKYQCALDNSFQVL 42


>Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical
           protein C12D8.12 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -2

Query: 369 NFMIMFMFCCKTLNFIFLQRCVFIQPFSY*MLPLRHFCR*KKTFQTQAFPKFVINVLMIL 190
           NF++M       + FIF  +C +    +  ++P R++   +K  QTQ F   V   L+ L
Sbjct: 202 NFLLMTTVSLFVI-FIFGFKCYY--EMTRVVVPGRNYSITQKLLQTQLFRALVFQTLIPL 258

Query: 189 FCMYL 175
             MY+
Sbjct: 259 IIMYI 263


>U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical
           protein T23H2.4 protein.
          Length = 467

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 460 LENVCTQLFSFYRSKEIQLQRFTLQFIPTLIYN 558
           L NVCT +   +RS     Q   +Q +P+ I N
Sbjct: 211 LSNVCTPISCHFRSSICSWQSTNIQLLPSKIVN 243


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
           protein ZK1193.2 protein.
          Length = 1250

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 289 EWLNEYTSLQENEV-QSFAAEHEHNHEIATAIFNLFYCEDETVTYNC 426
           +W++ Y  ++ N    +   + E   ++ T IFNL+        Y+C
Sbjct: 32  KWISNYQLIEFNSTTHTLIVDSESGQDLVTGIFNLYDQNRNHAGYSC 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,981,750
Number of Sequences: 27780
Number of extensions: 238133
Number of successful extensions: 607
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)