Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b22
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...   184   8e-48
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...   120   2e-28
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    66   4e-12
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.45 
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    29   0.59 
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.4  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   3.1  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   4.2  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    26   4.2  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    26   5.5  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   7.3  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   7.3  

>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score =  184 bits (449), Expect = 8e-48
 Identities = 78/135 (57%), Positives = 108/135 (80%)
 Frame = +3

Query: 252 LDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEINF 431
           L+ +   IK  + KKI  + GAGIST+AGIPDFRSPETG+Y+NLQ++ LP  +A+F++++
Sbjct: 15  LEKVASLIKEGKVKKICVMVGAGISTAAGIPDFRSPETGIYNNLQRFNLPYAEAVFDLSY 74

Query: 432 FRQNPKPFFTLAKELFPGSFKPTISHYFIRLLHEKGLLLRHYTQNIDTLERGAGIPEEKL 611
           FR+NP+PF+ LA EL P  ++PT +HYFIRLLH+K LL + YTQNIDTLER AG+P++ L
Sbjct: 75  FRKNPRPFYELAHELMPEKYRPTYTHYFIRLLHDKRLLQKCYTQNIDTLERLAGVPDKAL 134

Query: 612 VEAHGTFYTSHCLDC 656
           +EAHG+F  S C++C
Sbjct: 135 IEAHGSFQYSRCIEC 149


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score =  120 bits (289), Expect = 2e-28
 Identities = 57/136 (41%), Positives = 89/136 (65%)
 Frame = +3

Query: 249 SLDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEIN 428
           + + +V  +K  + K ++ L GAGISTS GI DFRS + G Y  L ++ L +P  +F+I+
Sbjct: 145 TFEDVVNLLK--KAKNVVVLVGAGISTSLGILDFRS-DNGFYARLARHGLSEPSEMFDIH 201

Query: 429 FFRQNPKPFFTLAKELFPGSFKPTISHYFIRLLHEKGLLLRHYTQNIDTLERGAGIPEEK 608
            FR+NP+ F+T A++L P +   + SH FIRLL +K  L   +TQNID LE+  G+ + K
Sbjct: 202 TFRENPEIFYTFARDLLPETNHYSPSHAFIRLLEKKNKLSTLFTQNIDNLEKKTGLSDNK 261

Query: 609 LVEAHGTFYTSHCLDC 656
           +++ HG+F T+ C+ C
Sbjct: 262 IIQCHGSFATATCIKC 277


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 45/120 (37%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
 Frame = +3

Query: 240 DEVSLDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQ-KYELP-QPQA 413
           + V L  +V  I+  + K+I+ ++GAGIS  AGIPDFRS E GL+ +L+ +Y+L    + 
Sbjct: 43  ENVDLSPLVSAIR--KAKRIVVVTGAGISCDAGIPDFRSSE-GLFSSLRAEYKLNCSGKE 99

Query: 414 IFEINFFR--QNPKPFFTLAKEL--FPGSFKPTISHYFIRLLHEKGLLLRHYTQNIDTLE 581
           +F+ + +R  ++   F  + ++L     + +PT  H F+  L ++  LLR YTQNID LE
Sbjct: 100 LFDGSVYRDLKSVNIFHAMIRKLHMLSNNARPTDFHLFLSQLAQESKLLRLYTQNIDFLE 159


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 36  ANSPPGKSGGHETVDESPQNVPPTTSM 116
           A +PPG  G + T + S  N PP  SM
Sbjct: 554 ATAPPGAPGSYNTSESSNLNAPPGVSM 580



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 63  GHETVDESPQNVPPTTSMESLRNMFRDLDVDDVRM 167
           G    DE P ++PP      + N +RD    + RM
Sbjct: 18  GRRRFDEKPDSLPPLPDANGMSNGYRDSYKSNSRM 52


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 1   GDAILYFYVKCRQIRLPEKV--AVTKPWMSHRRMSRQQLRW 117
           GD  +  Y+KC+  RLPE+    +   WM  + +S+    W
Sbjct: 93  GDFYVLEYIKCKYPRLPEEAVHGMQNGWMGSKALSQLATIW 133


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = +3

Query: 69  ETVDE--SPQNVPPTTSMESLRNMFRDLDVDDVRMYLALKLGLF--SPQDLEPAEPPEKV 236
           ET+D   S  N+P    + +LR M ++L+      +L + + LF  SP +L+P EP ++ 
Sbjct: 370 ETLDSKFSNWNLPHRLVLWTLRCM-KNLNNITATSFLLMHVSLFLGSPMNLQPVEPTQED 428

Query: 237 LDEVS 251
           +  VS
Sbjct: 429 IASVS 433


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 380  LTEVRTTSTTGDIRNKFLQAKSQTFLHISKGIISRKL*AYNFTLFHK 520
            LT +      GD+ N+ LQ   + F +++KG   +    +NF+ F K
Sbjct: 4237 LTSLDLARVDGDVANQLLQTIDKIFSNLTKGSFEKL--TFNFSNFVK 4281


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 300 ITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEINFFRQNPKPF 455
           + L  A +  + G+P  R P     H  + Y LP+     EI+FF QNP+ F
Sbjct: 407 VNLPAAQLQVAMGLPLSRIP-----HIRELYGLPR-DGDSEIDFFFQNPESF 452


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 75   VDESPQNVPPTTSMESLRNMFRDLDVDDVRMYLALKLGLFSPQD--LEPAEPPEKVLDEV 248
            +DE  QN+  T    SL+++  D  +D   + L  + G     D   EP+ P E+  +EV
Sbjct: 1189 IDEKEQNLEGTELDPSLQSLDTDYPIDTNALSLDHEQGFSDDSDSVYEPSSPIEEGDEEV 1248


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 237 LDEVSL--DGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQK 389
           LD + L  DG +R      CK+ + L G   ST  G P+F +PE  L     K
Sbjct: 792 LDNILLCPDGHIRIADYGLCKENMLL-GNTTSTFCGTPEFMAPEILLEQQYSK 843


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 427 ISSGKIPNLSSH*QRNYFQEALSLQFHIIS 516
           I +G    L  H + NYFQ+ L LQ  ++S
Sbjct: 336 IHTGLAETLVQHTKNNYFQKLLQLQHLLVS 365


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 84  SPQNVPPTTSMESLRNMFRDLDVDDVRMYLAL 179
           S  N  PT +     N+F DL V+++ +Y AL
Sbjct: 646 SSSNKRPTAAQLLTSNLFHDLVVNELHVYQAL 677


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 450 PFFTLAKELFPGSFKPTISHYFIRLLHEKGLLLRHYTQNIDTLER 584
           P   +  EL   SFKP  +   +  L   G++   + Q + TLER
Sbjct: 253 PLNQVLHELELKSFKPNCALVLLDFLIRHGIITPQHPQYLQTLER 297


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 339 IPDFRSPETGLYHNLQKYELPQP-QAIF 419
           +PDFR  + GL H  Q   LP+   AIF
Sbjct: 809 MPDFRGGDRGLSHKHQNIPLPKTCAAIF 836


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,619
Number of Sequences: 5004
Number of extensions: 63559
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)