Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b22
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.64 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 123 LRNMFRDLDVDDVRMYLALKLGLFSPQDLEPAEPPEKVLDEVSLD 257
           ++    D++ DD++  L+  +    P + E  E  +K LD  S+D
Sbjct: 292 IKKEVEDMEYDDIKTELSTGMNDDIPPETEEEEENDKKLDLDSID 336


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 532  RKGSYYVIIHKTLTH*SEEPAF--PKKN*SKHTERST 636
            R GSYY + H TL +  +E     P+K   K ++  T
Sbjct: 1064 RAGSYYGVPHSTLEYKVKERHLMRPRKRDQKQSDDKT 1100



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +3

Query: 549 RHYTQNIDTLERGAGIPEEKLVEAHGTFYTSHCLDC 656
           R + Q  DTL  G    E    +AH   Y +    C
Sbjct: 44  RRWKQYQDTLYSGTRSSESLTAQAHHRLYPAFSSSC 79


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 85  DSSTVS*PPLFPGGEFADILRKNTKL 8
           D+  ++   +  GGEF D+ R   KL
Sbjct: 629 DAGYITIEAIIGGGEFGDVCRGKLKL 654


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 111 SMESLRNMFRDLDVDDVRMYLALKLGLFSPQDL 209
           ++  L   FRDL + D+R    L +G F   +L
Sbjct: 351 TIPELNEEFRDLRLQDLRPLATLGVGGFGRVEL 383


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 222 PPEKVLDEVSLDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFR 353
           P ++ L  + ++     ++  R K    L   GIS    +P FR
Sbjct: 146 PMDRQLCHIEIESFGYTMRDIRYKWNAGLQSVGISNEVELPQFR 189


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 130 ICFAISTWMTFECT 171
           +C AIS+ M +EC+
Sbjct: 106 VCVAISSRMEYECS 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,715
Number of Sequences: 438
Number of extensions: 4280
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)