Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b19
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   3.1  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   3.1  
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...    24   5.4  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    24   7.1  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    23   9.4  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    23   9.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    23   9.4  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    23   9.4  

>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 126 GLCEGGLFECL 158
           G+CEGG F CL
Sbjct: 143 GICEGGFFPCL 153


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 142 AFSSACNIWEAIHNDPFNW 198
           AF SAC  W  +HN  F +
Sbjct: 2   AFLSACTSWRHVHNAGFTF 20


>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 266 QTKSRILNICFINKINY 316
           Q   R+LNIC   K+NY
Sbjct: 182 QVLQRLLNICKAEKVNY 198


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 124 MAYVKEAFSSACNIWEAIHNDPFNWNLFKSLTFFFLGLKLF 246
           + + +   + + N  E +     +WN F +L F  LG+  F
Sbjct: 201 LGFARMFLTKSINYQEHVSEYGMHWNFFFTLGFMALGVFFF 241


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 181 NDPFNWNLFK 210
           NDP NWN F+
Sbjct: 47  NDPLNWNKFR 56


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 126 GLCEGGLFECL 158
           G CE GLF CL
Sbjct: 158 GFCEAGLFPCL 168


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 148 KRPPSHKPLISFTQVIIAPKYNSINKND 65
           KRP    P ISF   + + K N + K+D
Sbjct: 141 KRPQQKGPEISFQSSVQSTKGNDLMKHD 168


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 154 HSKRPPSHKPLISFTQVIIAP 92
           HS  PP H PL    Q ++ P
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,011,091
Number of Sequences: 5004
Number of extensions: 16265
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)