Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b19
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    27   4.4  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   4.4  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   4.4  

>Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical
           protein C08F8.9 protein.
          Length = 55

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 163 IWEAIHNDPFNWNLFKSLTFFFLGL 237
           I   ++NDPF W++FK +  F +G+
Sbjct: 17  IVNTVYNDPFFWSVFKGVIGFGVGV 41


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 133  VKEAFSSACNIWEAIHNDPF 192
            V+++ SS+ N W+ + NDPF
Sbjct: 1901 VRQSVSSSTNSWDYMFNDPF 1920


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 133  VKEAFSSACNIWEAIHNDPF 192
            V+++ SS+ N W+ + NDPF
Sbjct: 1901 VRQSVSSSTNSWDYMFNDPF 1920


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 133  VKEAFSSACNIWEAIHNDPF 192
            V+++ SS+ N W+ + NDPF
Sbjct: 1901 VRQSVSSSTNSWDYMFNDPF 1920


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,501,632
Number of Sequences: 27780
Number of extensions: 89396
Number of successful extensions: 207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)