Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b18
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   4.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.9  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 152 NNNPRYLEQLYDNIYY 199
           NNN  Y ++LY NI Y
Sbjct: 97  NNNNNYNKKLYYNINY 112


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +2

Query: 317 PKQTLLRWL----RLTPPYALILALTSTWMRHINTGPFWHEMAVSEIRD 451
           PK+T LRW+     +T P +      +   +H+ T     +M V E+ D
Sbjct: 351 PKKTRLRWMMEIPNVTLPTSTYSGSPTELPKHLPTSLTKSKMEVMELSD 399


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 152 NNNPRYLEQLYDNIYY 199
           NNN  Y ++LY NI Y
Sbjct: 335 NNNNNYNKKLYYNINY 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,838
Number of Sequences: 438
Number of extensions: 4971
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)