Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b16
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   0.91 
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   2.1  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    26   3.7  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 275  LNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLFV 174
            L+ FSQ FH F+     L +  HL  L + LLF+
Sbjct: 1016 LSKFSQKFHGFLILHDNLKDHIHLEELWLNLLFL 1049


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 287 QWIQLNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLF 177
           Q ++L+     F + +FY+   DN G LNN  +  LF
Sbjct: 297 QIVELSPKGYRFLVDLFYQFDRDNDGALNNEELSALF 333


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 365 SKQFN*W*VLFITIFK*NNNTLL*SLQWI 279
           SKQ N +   F+  FK  NNTL  SLQ+I
Sbjct: 9   SKQMNRFSTPFVFFFKKLNNTLKKSLQFI 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,913
Number of Sequences: 5004
Number of extensions: 41678
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)