Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b16
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0453 - 17886095-17886868,17887928-17888043,17888300-178884...    28   4.8  
07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827...    27   8.5  
06_03_0288 - 19179619-19179714,19180209-19180300,19180408-191804...    27   8.5  
04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911     27   8.5  

>11_04_0453 -
           17886095-17886868,17887928-17888043,17888300-17888423,
           17889734-17889963,17891395-17891452
          Length = 433

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 142 LCSPIYFCRQITNSKIILRLLRCP 213
           L S +YFC+++TNS +I     CP
Sbjct: 228 LQSVLYFCQRMTNSALITVAKNCP 251


>07_03_1263 +
           25279899-25279985,25280263-25282372,25282700-25282793,
           25283178-25283314,25283419-25283454,25283602-25283642,
           25284036-25284125,25284229-25284284,25284947-25285030,
           25285072-25285150
          Length = 937

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 477 FYSHLYNYLYTVVSFCIYRKVK-LIDVFAYLLIS-FNINIKTI*LMVSAF 334
           F   +YNY   + +FC +R +K  + +F  +L +  N NI T  ++V  F
Sbjct: 454 FVPDVYNYTSLIYAFCRHRYLKEALGLFELMLDNKINPNIITCTILVDGF 503


>06_03_0288 -
           19179619-19179714,19180209-19180300,19180408-19180494,
           19180802-19180963,19181032-19181183,19181526-19181872
          Length = 311

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 272 NVFSQNFHIFIFYEQFL 222
           NVFS +F +++FY+ FL
Sbjct: 155 NVFSPSFRLYLFYQTFL 171


>04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911
          Length = 575

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 142 LCSPIYFCRQITNSKIILRLLRCP 213
           L S +YFC Q+TN+ ++     CP
Sbjct: 369 LNSLLYFCHQMTNAALVTVAKNCP 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,361,032
Number of Sequences: 37544
Number of extensions: 201666
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)