Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b13
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    29   0.77 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    28   1.0  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    27   3.1  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    26   5.4  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.2  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   7.2  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.5  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 640 EISFK*NYIFICQVASFPFSKS-SDQTST*QRTKLNCIICTFLTK 509
           E +F  NY    Q+ +  FSK+ ++Q+   QR+   CI  TF+TK
Sbjct: 365 ENAFSQNYYSHLQMVAKHFSKNYANQSGIVQRSFAECISSTFITK 409


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 129 SSYKPIDSKREEFRR-YLERAGVMDALTKVLVSLYEEPDKPEDALEYVRKHLGS 287
           SS + + +  E F   +LE+  +   L KV   L ++ +  +D ++ V+KHL S
Sbjct: 532 SSERRVSASAEIFAMAFLEQETIPSDLLKVRKDLLDDSNAAKDTMDKVKKHLKS 585


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +3

Query: 126 MSSYKPIDSKREEFRRYLERAGVMDALTKVLVSLYEEPDKPEDALE 263
           M++Y+ + + +E+ ++YL +    DALT +  ++ +EP+   D  E
Sbjct: 1   MNNYQ-VKAIKEKTQQYLSKRKFEDALTFITKTIEQEPNPTIDLFE 45


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 60  FEYKTVFILKKLLGISAKIF*NMSSYKPIDSKREEFR 170
           +++K+  +L+ L+G    I+ N  SY+ ++S+ E  +
Sbjct: 781 WKFKSRSVLRSLIGKGKNIWENTESYQKLESELENLK 817


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 449 IKTLT*CYKIILLNC*MVGYFG*KSADDAIKF---CS-LLSTCLI*TF*KWERSNLTN 610
           I+ +   ++ +L  C  +  FG   + + + F   C  LLS CLI TF K    NL N
Sbjct: 644 IRNVELAFREVLRQCGSIAKFGIIFSIELVVFPIFCGILLSMCLIGTFKKLAAENLLN 701


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 138 KPIDSKREEFRRYLERAGVMDALTKVLVSLYEEPDKP---EDALEYV 269
           K +D+K   F R +    V+DAL KV  +  + P  P   ED + +V
Sbjct: 384 KHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPKLPIKLEDIIIFV 430


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 183  RAGVMDALTKVLVSLYEEPDKPEDALEYV 269
            R GV D +  +    + +PD PE   +Y+
Sbjct: 1669 RIGVADEIVPLFNIAWVDPDSPEKGFDYI 1697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,782
Number of Sequences: 5004
Number of extensions: 35166
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)