Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b08
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323           27   8.1  
04_04_0819 - 28312667-28313219,28315157-28316430                       27   8.1  

>06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323
          Length = 905

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 315 RGAVPCDLARYRSTAVLESQKTIVHHRPPKCF*NLKTIS 199
           RG++P +L   RS  VL+  +  +    P+CF +L  +S
Sbjct: 818 RGSIPEELGNLRSLEVLDLSRNDLSGPIPQCFLSLSGLS 856


>04_04_0819 - 28312667-28313219,28315157-28316430
          Length = 608

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 345 DPCIPLRLPQRGAVPCDLARYRSTAVLESQKTIV 244
           +PC+PLR+ ++G    D     S  VLE+ +  V
Sbjct: 506 EPCLPLRIARQGLSRRDTYTSESLVVLEAHEAAV 539


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,591,330
Number of Sequences: 37544
Number of extensions: 194781
Number of successful extensions: 388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)