Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b07
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   1.7  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   4.0  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    25   7.0  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 427 KMYDKIKIGEVIYFSYLLKKVLKEEALPTIEHQFHPLLDQQQSI 558
           KMY    + + +YF  L K +L++  L   EHQF  +  + Q I
Sbjct: 488 KMYLLENLSDRLYFCKLAKLLLRKYPLDIAEHQFALVYSRFQRI 531


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 277 RTGKKKNYQMPLSFFQPTTPTRLINWTK 360
           +TG K N+Q  ++F + T  TR++N  K
Sbjct: 825 KTGNKDNFQNMINFDKRTKVTRILNEIK 852


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 322 QPTTPTRLINWTKSMGINLKATDS 393
           +P    R +NWT  + + LKATD+
Sbjct: 153 KPKIVERSVNWTTELLLALKATDA 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,744
Number of Sequences: 5004
Number of extensions: 42775
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)