Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b07
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    29   3.7  

>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/63 (20%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 433 YDKIKIGEVIYFSYLLKKVLKEEALPTIEHQFHPLLDQ-QQSILKVQELL-IDPQNSCYS 606
           Y  + + EV+Y +++ K +   +++      F P+++    + L +++++ +D Q S Y 
Sbjct: 618 YPTLPVNEVVYDAHIRKPIPTSKSIAEPVEHFRPIIENVTPASLSLEDIIAMDNQRSDYE 677

Query: 607 TDY 615
            +Y
Sbjct: 678 DEY 680


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/63 (20%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 433 YDKIKIGEVIYFSYLLKKVLKEEALPTIEHQFHPLLDQ-QQSILKVQELL-IDPQNSCYS 606
           Y  + + EV+Y +++ K +   +++      F P+++    + L +++++ +D Q S Y 
Sbjct: 618 YPTLPVNEVVYDAHIRKPIPTSKSIAEPVEHFRPIIENVTPASLSLEDIIAMDNQRSDYE 677

Query: 607 TDY 615
            +Y
Sbjct: 678 DEY 680


>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 328 TTP-TRLINWTKSMGINLKATDSICQFHFKEEHIKMYDKIKIGEVIYFSYLLKKVL 492
           TTP    + W +     LK  D I    F E H   YD+I +G V   S LLK++L
Sbjct: 135 TTPEASSVGWARP---ELKVCD-ITDVKFLEAHQNRYDRIFVGFVADDSQLLKRML 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,365,003
Number of Sequences: 27780
Number of extensions: 235052
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)