Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22b06
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 34 0.12
03_02_0283 - 7078754-7078856,7079358-7079431,7079995-7080090,708... 33 0.28
03_05_0267 - 22538631-22539452 32 0.50
07_01_0945 - 7973736-7974275,7974446-7974580 31 0.87
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 30 2.0
12_02_1057 + 25733376-25735439 29 3.5
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635... 29 3.5
09_06_0261 - 21919017-21920594 29 4.6
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 29 4.6
05_05_0290 - 23879064-23880035 29 4.6
11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858... 28 6.1
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489 28 6.1
07_03_1069 + 23743031-23744062 28 8.1
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 255 WTPTASAPLATARGRRRSENETSPSLPYP 169
W + P A ARGRRR+ PSLP+P
Sbjct: 61 WRIDGNKPAAAARGRRRASLTAMPSLPFP 89
>03_02_0283 -
7078754-7078856,7079358-7079431,7079995-7080090,
7080145-7080270,7080856-7080939,7081458-7081506,
7081630-7081688,7081908-7081925,7082141-7082620
Length = 362
Score = 32.7 bits (71), Expect = 0.28
Identities = 26/80 (32%), Positives = 38/80 (47%)
Frame = +1
Query: 382 PDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCPPVAPLAATRRIIPS 561
P RP TSP A +SP +PR + + AA++ RR ++ P P T R P
Sbjct: 6 PQRPPATSPPAPAAAAASPQPLPRAF---LAAAASSPRRAAASPAPAPPPPPFTGR--P- 59
Query: 562 YLVPIPTYRCRCSK*IIIPV 621
L P P++ + I+ PV
Sbjct: 60 -LNPNPSHHATAAHGILYPV 78
>03_05_0267 - 22538631-22539452
Length = 273
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 406 PRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCPPVAPLAATRRIIPSYLVPI 576
PR W +PSSP P P S +++ R CS P +P +IPS +V +
Sbjct: 178 PRWWPCSPSSPPASPSPSPARTSPPSSSPSRGCSARRPTPSP-PVLGWVIPSVVVAL 233
>07_01_0945 - 7973736-7974275,7974446-7974580
Length = 224
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 424 APSSPALVPRTWPGIYSDAATTGRRCCSTTCPPVAPLAAT 543
AP+ P P WP + S A + C + PVAPL+++
Sbjct: 157 APAPPLSSPCRWPRVASTGARQWQGCHAAWLSPVAPLSSS 196
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -1
Query: 542 VAARGATGGHVVEQHRLPVVAAS-EYIPGHVLGTSAGLLGARLQHLGDVTPGRSGSQLPK 366
+ A G T H V R + A E IP VL +GL H P + QLP
Sbjct: 343 MGAYGYTHMHPVPHEREMMYAQQVEGIPNTVLIDPSGLHQHVYVHQQQQVPPQ---QLPS 399
Query: 365 YRGFEQLPVLPD 330
GF Q+PV+P+
Sbjct: 400 TYGFNQIPVIPN 411
>12_02_1057 + 25733376-25735439
Length = 687
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 544 VLPLEAPPAGM*SNSTAFLL*PHLNIFQATSSGLAPGCSAHASSTLVTSR 395
VL EAPP + + P ++ F TSS +A G S+ ++ T +SR
Sbjct: 629 VLRGEAPPPSLPARMPVATFLPPVDAFNHTSSSVATGSSSASTDTTRSSR 678
>09_04_0627 -
19061106-19061474,19062067-19062909,19063395-19063501,
19064301-19064332,19064384-19064663,19065092-19065475,
19066730-19066803,19067244-19067310,19067415-19067486,
19067941-19068000,19068683-19068734,19068874-19068943,
19069110-19069372
Length = 890
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 385 DRPGVTSPRCWRRAPSSPALVPRTWPGIYSD-AATTGRRCC 504
D + PR RR+P+ P L+P P D RRCC
Sbjct: 369 DAISYSHPRAKRRSPTPPGLIPVGLPTCNPDLIEVEDRRCC 409
>09_06_0261 - 21919017-21920594
Length = 525
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +1
Query: 457 WPGIYSDAATTGRRCCSTTCP-PVAPLAATRRII 555
W G A G RC S CP P P A R ++
Sbjct: 159 WRGYVRAAVGDGARCLSLRCPDPSCPAAVVRELV 192
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 343 PSFPIILQLSRTQYTCFLSAASSISSPFIMD 251
P PII Q+S +Q+ L S +PFI+D
Sbjct: 508 PEVPIIGQVSASQHVALLMDQVSTKNPFILD 538
>05_05_0290 - 23879064-23880035
Length = 323
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 458 HVLGTSAGLLGARLQHLGDVTPGRSGSQLPKYRGFEQLPVL 336
+VLG LL LQHL + P R+G+ K E LP +
Sbjct: 154 YVLGAGLSLL---LQHLAESDPSRNGTPPAKKEAVEALPTV 191
>11_03_0107 +
10084234-10084348,10084830-10084834,10085351-10085803,
10086143-10086267,10087282-10087345,10087452-10087508,
10088475-10088485,10089923-10090802
Length = 569
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +1
Query: 439 ALVPRTWPGIYSDAATTGRRCCSTTCPPVAPLAATRRIIPSYLVPI 576
A P P + AATT STTC PV + ++ YLVPI
Sbjct: 49 AYTPSLHPPPCNPAATTA--AASTTCEPVRGANLSLLLLGLYLVPI 92
>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
Length = 282
Score = 28.3 bits (60), Expect = 6.1
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = -2
Query: 472 NIFQATSSGLAPGCSAHASSTLVTSRPAGLAASF-PSIAALSSFPSFPIILQLSRTQYTC 296
++ + TSS L+ C AH+SS SRP F + AA SS PS I + ++
Sbjct: 10 SLLRRTSSALSRRC-AHSSSAAAPSRPPVPLPRFRAAAAAASSSPSSGI----TSRRFLA 64
Query: 295 FLSAASSISSPFIMDSN---SLGSTRDCARQASE 203
S +SS S D N + S +C Q+ E
Sbjct: 65 SKSPSSSSPSKASADENLVRVIDSEIECIVQSEE 98
>07_03_1069 + 23743031-23744062
Length = 343
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 517 PPVAPLA-ATRRIIPSYLVPIPTYRC 591
PPV+P A A R+ P+Y VP+ RC
Sbjct: 73 PPVSPPAGAKRKRAPAYPVPVAPLRC 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,302,901
Number of Sequences: 37544
Number of extensions: 348937
Number of successful extensions: 1381
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -