Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b05
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    27   2.8  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.8  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.7  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    27   3.7  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   4.9  

>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 485 VPKLILLQNPIKWLMIKIDFSVLRNVWDPTFEEKDFKYGTKQAISRVTQVISDGQFSE 658
           VP+L+ L +PIK  +  +D S    +  P F  KD   G++ A       I    F E
Sbjct: 574 VPRLMFLPDPIKVTLENLDDSYREQIEIP-FNPKDPSMGSRSAFLTKHIYIDRSDFRE 630


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 615 IACLVPYLKSFSSNVGSHTFLNTLKSILI 529
           I C++   K  S+  G +TF+N L+S LI
Sbjct: 97  IICVIGLWKGLSAMSGKNTFINGLQSYLI 125


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 741 NERCLLLQLRSNSRNKLNRAAFVSKPFNSEN*PSLIT 631
           N+R  L  L+++ RN L+R    + PF S+N  SL T
Sbjct: 229 NDRPPLPVLKNSERNLLHRQLLSNHPFFSQNNVSLST 265


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 565 PHVS*YTEIYFDHQPFNRVLKQYQFRYAFYVF 470
           PH+      +F H+ F+ +L +Y+ +  FY++
Sbjct: 55  PHLLLRRGAFFSHRDFDMILDRYEQKKPFYLY 86


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 228 LASGYNRLTYLIGTAILRPWQ*CCFFIAVSSTFYFTQ 118
           +AS Y  L   +    + PW  CC +I +   F FT+
Sbjct: 1   MASSYLSLAARLSQCWISPWSLCCLYI-LMQFFLFTK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,808
Number of Sequences: 5004
Number of extensions: 64751
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)