Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b02
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    61   2e-10
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    29   0.46 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   5.7  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   7.5  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   9.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   9.9  

>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
 Frame = +2

Query: 296 EEEVTAETVLKTLQSAWQNERLSPEILPHQNDMVECMLGQIQHMERN----INKLSKTDL 463
           E     E   + L + W NER++P++LP   ++V  +L +I+         I   S T  
Sbjct: 11  EPTTEVENDYEDLCTQWVNERMAPDLLPFAEEIVSRVLDRIEAQRETLQLAIGTSSATSY 70

Query: 464 RTSIHKMEISRIKFIICNYLKTRLNKIEKY 553
           R+ + + E+ R+KF++ +Y++TR+NKI+KY
Sbjct: 71  RSVLMQTELERVKFVLRSYMRTRINKIDKY 100


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +2

Query: 281 QFSDDEEEVTAETVLKTLQSAWQNERLSPEILPHQNDMVECMLGQIQHMERNINKLSKTD 460
           +F  + EEV  + +LK   S W+N RL  E L     ++     QI H     +      
Sbjct: 75  KFQSNTEEVNEDPILKPSLSVWENNRLLIEKL---TSILNIPSSQINHEFYKNSSAWPIT 131

Query: 461 LRTSIHK 481
           +R  IH+
Sbjct: 132 IRNLIHR 138


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 440 NKLSKTDLRTSIHKMEISRIKFIICNYLKT 529
           N+LSK +L +SIH  ++   K II N LK+
Sbjct: 127 NQLSKDELLSSIHSWQVKYQKSII-NQLKS 155


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 281 QFSDDEEEVTAETVLKTLQSAWQNERLSPEILPHQNDMVE 400
           Q S+   E +A  + K    AWQNE LS    P +   VE
Sbjct: 438 QQSESTYEYSARQLPKPPVQAWQNENLSSNNKPQEYVGVE 477


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 219 VALEFCGYI*FRRIWSQPKSCSS 287
           ++L FC Y   +R+W QP+ C+S
Sbjct: 443 ISLFFCLY---KRLWRQPQLCNS 462


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 559  NAIFFNLIQSSFKIITNNKFNSANLHFVYRSSQISF*KFI 440
            NA+ +NL+ S  +I +   F +  +   Y   Q+S   F+
Sbjct: 1022 NAVLYNLVVSDDQISSQEAFENFEVKMAYTVRQLSLKVFL 1061


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,799
Number of Sequences: 5004
Number of extensions: 42988
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)