Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22b02
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0310 + 2446054-2446224,2446342-2446464,2446570-2446652,244...    69   3e-12
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781...    29   3.4  

>05_01_0310 +
           2446054-2446224,2446342-2446464,2446570-2446652,
           2446762-2446895,2448110-2448185,2448268-2448367
          Length = 228

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 40/123 (32%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
 Frame = +2

Query: 311 AETVLKTLQSAWQNERLSPEILPHQNDMVECMLGQIQHMERNINKLSKT---DLRTSIHK 481
           A T ++ L+ AW+NE+ SPEIL   + +V  +  QIQ +E  ++   ++   DL  S+++
Sbjct: 19  ASTDVELLKRAWRNEKASPEILRFDSPLVSRVREQIQLLEETLDDFGESGVDDLVVSLYQ 78

Query: 482 MEISRIKFIICNYLKTRLNKIEKYCIPILNQERQRIETDTNYLTPSEYKYAQEYVLNMEN 661
           M++ R  F++ +YL+ RL KIEKY + I      + E   + L+  E ++A+     ME 
Sbjct: 79  MDLDRTLFLLRSYLRLRLQKIEKYMMHI-----SKSEDLLSRLSQQEQRFAKSCTEMMEK 133

Query: 662 HMK 670
           H++
Sbjct: 134 HLE 136


>06_03_0025 -
           15577231-15577420,15577682-15577813,15578025-15578173,
           15579012-15579071,15593208-15593297,15593604-15593871,
           15594517-15594608,15595355-15595441,15597333-15597440,
           15597709-15597822,15598253-15598420,15599442-15599579,
           15599699-15599908,15600986-15601237,15601965-15602111,
           15603327-15603443
          Length = 773

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 118 YNELVKKAL*NLKNTRTQIRVVKARIISFSDNLKLH*NSVGIYNLEEYGVNRR 276
           Y +LV   L  L  T T+ RV + ++ S    + L   S+G YN+ E+G ++R
Sbjct: 64  YGQLVPGGLALLARTGTEGRVREVKV-SDGGTVNLLSRSLGEYNINEHGFHKR 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,755,375
Number of Sequences: 37544
Number of extensions: 206960
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)