Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22b01
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0139 + 12247051-12247155,12247250-12247327,12247412-122475... 30 1.5
11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155 30 1.9
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 29 2.5
05_07_0132 + 27903236-27903376,27903498-27903659,27903755-279039... 29 4.4
02_01_0428 - 3127098-3129254 29 4.4
05_04_0393 - 20895485-20895645,20895750-20896358,20896541-208966... 28 7.7
03_02_0406 + 8182870-8184262,8184376-8184452,8184809-8184920,818... 28 7.7
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875... 28 7.7
>06_02_0139 +
12247051-12247155,12247250-12247327,12247412-12247519,
12247882-12247944,12248024-12248185,12248424-12248624,
12248663-12248725,12248915-12249244,12249870-12250034,
12250110-12251078
Length = 747
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Frame = +1
Query: 352 MDLSLKSITKKLQKHHVEESNQTRVLISVLNVMKNLLFTASKISIFSPLFVKSF------ 513
+DLS SI + + V N RV +L ++ N+L S I FS + +
Sbjct: 174 LDLSHDSILHNVDEQTVRSLNGCRVTDKILRLVPNILVCTSCIVYFSDDMLNALWWIRYD 233
Query: 514 --*FLTGYKINLTFALRSTGKRNSIYSN 591
F + ++ L F +R KR +YSN
Sbjct: 234 GRLFASTFRTTLRF-MRFWAKRRGVYSN 260
>11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155
Length = 361
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 173 PLIFCEFSYIRAI*KCSHIACTHLFVTKLILCRFNILISHFN 48
PL CE S+ + + HI +L++ +++C+ +L+ H N
Sbjct: 90 PLNTCELSFDQI--RRQHIPRVNLWIRHIVMCKVRVLVLHLN 129
>04_04_1093 + 30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Frame = +3
Query: 48 IKMGNQNIKAAQNKFCDKQMSAGDVGTFSNGSNIRKFT-----KNQGPGRPR-KTGKIQS 209
+ Q KA ++F D ++ A + + +++F G G +T K+
Sbjct: 758 LSQAEQEFKAQLDRFADVELDALCSSITALSARMKRFAHPAIGSAAGTGMSTWQTPKVGR 817
Query: 210 SREKDN-IKLSRSDIQRIKNMLNESRPVMLTLMDPNRTN 323
S D+ + L +S ++++ ++LNE V LTL +P N
Sbjct: 818 SHVSDSQMSLLKSSLEKL-SLLNEENNVKLTLREPELKN 855
>05_07_0132 +
27903236-27903376,27903498-27903659,27903755-27903903,
27903999-27904325,27905123-27905323,27906095-27906155,
27906517-27906718,27906899-27907020,27907143-27907247,
27907369-27907452
Length = 517
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -3
Query: 304 ISVNITGLLSLSMF----LILCISDRDSLMLSFSRELCIFPVFL 185
IS+N+ L LS L+LC S D+L +FSREL + +++
Sbjct: 389 ISINLGPLEELSNLCKADLLLCESGGDNLAANFSRELADYIIYI 432
>02_01_0428 - 3127098-3129254
Length = 718
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 328 IHSTSIH*MDLSLKSITKKLQKHHVEESNQTRVLISVLNVMKNLLFTA 471
+ STS+ +D+S ++ LQ+ + S T + VLN+ N LFTA
Sbjct: 110 VSSTSLVILDISFNHLSGALQEFSAQISETTIRPLQVLNISSN-LFTA 156
>05_04_0393 -
20895485-20895645,20895750-20896358,20896541-20896616,
20896729-20896920,20897118-20897438,20897880-20898119,
20898205-20898522,20898621-20898678,20898778-20898936,
20900090-20900308,20900400-20900614
Length = 855
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 565 GKRNSIYSNTGHWRAVFVFRGDPRV 639
G+R S S+ HW V ++RG P V
Sbjct: 754 GRRQSARSDGAHWPRVSIYRGHPFV 778
>03_02_0406 +
8182870-8184262,8184376-8184452,8184809-8184920,
8185064-8185071,8185633-8186217
Length = 724
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 142 LI*ENSQKIKGQEDQEKQEKYKALVKKITLNCHDLIYKELK 264
LI E + ED E+ + + L+ + NCHD +E+K
Sbjct: 654 LIPEVASMSSSSEDDEENDHSEPLMASVEHNCHDQSSEEMK 694
>02_04_0657 +
24786717-24786924,24786925-24786965,24787379-24787521,
24787597-24787774,24788054-24788123,24788197-24788345,
24788491-24788586,24789213-24789283,24789879-24789940,
24790175-24790238,24790326-24790410,24790515-24790641,
24790714-24790775,24790863-24790923,24790987-24791147,
24791355-24791648
Length = 623
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 237 SRSDIQRIKNMLNESRPVMLTLMDPNRTNLYP 332
SR+ K +L+ SRP +DPNR+NL P
Sbjct: 539 SRNGSTSRKALLSSSRPSSGDPIDPNRSNLIP 570
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,381,155
Number of Sequences: 37544
Number of extensions: 281863
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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