Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22b01
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ... 30 1.7
U41508-6|ABS19459.1| 323|Caenorhabditis elegans Hypothetical pr... 29 3.9
U41508-5|AAG00025.2| 511|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF326938-1|AAG49388.1| 511|Caenorhabditis elegans XG314 protein. 29 3.9
Z82288-8|CAB05329.3| 328|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z81102-5|CAB03205.3| 328|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z99281-46|CAB54455.3| 795|Caenorhabditis elegans Hypothetical p... 27 9.1
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z78059-6|CAH04727.1| 362|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z78014-4|CAH04707.1| 362|Caenorhabditis elegans Hypothetical pr... 27 9.1
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 27 9.1
U40952-1|AAK68681.3| 436|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
protein K02F6.4 protein.
Length = 1193
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 150 RKFTKNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMD 308
RKF++N P PR++ + + +K +I ++ I+ LN+ M L+D
Sbjct: 10 RKFSQNHSPPPPRRSSALHDAIDKLSIVARVTNAITIQKGLNDKSMKMANLLD 62
>U41508-6|ABS19459.1| 323|Caenorhabditis elegans Hypothetical
protein W01C8.5b protein.
Length = 323
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 162 KNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNM 269
K G+P G ++ S E+ N D++ IKN+
Sbjct: 92 KKNTDGKPMARGVLKGSAERTNFTFQLGDVEHIKNL 127
>U41508-5|AAG00025.2| 511|Caenorhabditis elegans Hypothetical
protein W01C8.5a protein.
Length = 511
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 162 KNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNM 269
K G+P G ++ S E+ N D++ IKN+
Sbjct: 280 KKNTDGKPMARGVLKGSAERTNFTFQLGDVEHIKNL 315
>AF326938-1|AAG49388.1| 511|Caenorhabditis elegans XG314 protein.
Length = 511
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 162 KNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNM 269
K G+P G ++ S E+ N D++ IKN+
Sbjct: 280 KKNTDGKPMARGVLKGSAERTNFTFQLGDVEHIKNL 315
>Z82288-8|CAB05329.3| 328|Caenorhabditis elegans Hypothetical
protein M02B1.1 protein.
Length = 328
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -2
Query: 374 ILFRERSIQWIDVLWIQISSVRIHKC*HYRPTLVKHVFNSLYIRS*QFNVIFFTRALYFS 195
+L+ SI W+ VLW + + + C Y + K+ S+ I IF +
Sbjct: 227 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSF 286
Query: 194 CFSWSSWPLIFCEFSY 147
F + +IF F Y
Sbjct: 287 TFLLGASLVIFSIFLY 302
>Z81102-5|CAB03205.3| 328|Caenorhabditis elegans Hypothetical
protein M02B1.1 protein.
Length = 328
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -2
Query: 374 ILFRERSIQWIDVLWIQISSVRIHKC*HYRPTLVKHVFNSLYIRS*QFNVIFFTRALYFS 195
+L+ SI W+ VLW + + + C Y + K+ S+ I IF +
Sbjct: 227 LLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSF 286
Query: 194 CFSWSSWPLIFCEFSY 147
F + +IF F Y
Sbjct: 287 TFLLGASLVIFSIFLY 302
>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
protein F59F3.5 protein.
Length = 1199
Score = 28.3 bits (60), Expect = 5.2
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Frame = +3
Query: 54 MGNQNIKAAQNKFCDKQMSAGD-VGTFSNGSNIRKFTKNQGPGRPRKTGKIQSSR-EKDN 227
+ +N A ++ + + G V T NG + TK G +T ++S + E
Sbjct: 381 INKKNYTAKWSRLYNSTVEGGQQVETIRNGFFRQITTKTSGRNVFLETLNLKSPKIEMSG 440
Query: 228 I---KLSRSDI-QRIKNML---NESRPVMLTLMDPNRTNLYPQHIYPLNGSLS 365
I +S DI Q++K ++ N+ LT+ DP N+ Q PLN +LS
Sbjct: 441 IYVLSISNMDIVQQVKWIIEVENDEPNAQLTIRDPLTLNISNQLFLPLNTNLS 493
>Z99281-46|CAB54455.3| 795|Caenorhabditis elegans Hypothetical
protein Y57G11C.32 protein.
Length = 795
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 127 HFQMALI*ENSQKIKGQEDQEKQEKYKALVKKITL 231
H+ + + ++ IKG+ED KQ+ +AL K++ L
Sbjct: 544 HYHVPDLLDDFDIIKGKEDDSKQQVDEALAKQLNL 578
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 157 SQKIKGQEDQEKQEKYKALVKKI 225
S KIKG++D EK E + L KKI
Sbjct: 402 SSKIKGEKDFEKYETARRLKKKI 424
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 157 SQKIKGQEDQEKQEKYKALVKKI 225
S KIKG++D EK E + L KKI
Sbjct: 474 SSKIKGEKDFEKYETARRLKKKI 496
>Z78059-6|CAH04727.1| 362|Caenorhabditis elegans Hypothetical
protein C34B4.3 protein.
Length = 362
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 221 FFTRALYFSCFSWSSWPLIFCEFSYIRAI*KCSHIACTHLFVTKLILCRFNILISHF 51
+F+ ++S SWS W I ++ K S+ C ++ LIL +L +HF
Sbjct: 109 WFSMVSHYSVVSWSRWMAIRKPLNFRNQKRKTSYSLCALCYLVALIL----VLSTHF 161
>Z78014-4|CAH04707.1| 362|Caenorhabditis elegans Hypothetical
protein C34B4.3 protein.
Length = 362
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 221 FFTRALYFSCFSWSSWPLIFCEFSYIRAI*KCSHIACTHLFVTKLILCRFNILISHF 51
+F+ ++S SWS W I ++ K S+ C ++ LIL +L +HF
Sbjct: 109 WFSMVSHYSVVSWSRWMAIRKPLNFRNQKRKTSYSLCALCYLVALIL----VLSTHF 161
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 157 SQKIKGQEDQEKQEKYKALVKKI 225
S KIKG++D EK E + L KKI
Sbjct: 474 SSKIKGEKDFEKYETARRLKKKI 496
>U40952-1|AAK68681.3| 436|Caenorhabditis elegans Hypothetical
protein C03B1.13 protein.
Length = 436
Score = 27.5 bits (58), Expect = 9.1
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 367 KSITKKLQKHHVEESNQTRVLISVLNVMKNLLFTASKISIFSPLFVKSF-*FLTGYKINL 543
++I KL H E SN R LIS +M+N FT SK + + + +SF FL G +
Sbjct: 161 EAIHSKLFYHGTERSNSYRPLISNYEMMEN-KFT-SKYANYGKSWRESFKGFLIGAIVAA 218
Query: 544 TFALRSTGKRNSIYSN 591
++A ++ SN
Sbjct: 219 SYAFTGDDLIDTFSSN 234
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,498,370
Number of Sequences: 27780
Number of extensions: 297778
Number of successful extensions: 876
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -