Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22a22
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    27   3.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.0  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   8.0  

>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
 Frame = -1

Query: 193 RERYIDEYEDL-----LSSAN---LSGATHLGSLHRSAMAANPHALRHGRLMDVL 53
           RERY D Y+ +     LSSA    L+G  ++GSL    + ++P A R G+ + ++
Sbjct: 41  RERYADRYDPITDQYSLSSARQGLLTGMVNVGSLF-GCIISSPIADRFGKRLSII 94


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 153 VQISLVQPILAAFTGARWLRIHMHFDTAVSWMY*TLTQHRQTTSAA 16
           VQ+ +V+ +LAA T  R +  H    TAV   Y      + +T+ A
Sbjct: 241 VQLQIVKALLAAITSERTIIRHSFLLTAVRQTYNIFLLCKDSTTQA 286


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 193 RERYIDEYEDLLSSANLSGATHLGSLHRSAMAANPHALRHGR 68
           +ER  ++ +D L+ A   G THL  L R+   AN   +R  R
Sbjct: 62  KERKANKIKDYLTMAGPLGVTHLLVLSRTDNNANLRIIRAPR 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,035
Number of Sequences: 5004
Number of extensions: 33051
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)