Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22a22
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915... 35 0.055
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 31 1.2
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 31 1.2
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 31 1.2
12_01_0779 + 7129879-7130398,7130585-7130664 30 2.1
07_01_0312 + 2214050-2214556 29 2.7
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173... 29 3.6
07_03_0852 - 22020159-22021388 29 3.6
02_05_0192 + 26602247-26602617,26602701-26603016 29 3.6
12_01_0346 + 2652181-2653566 29 4.8
01_01_0030 + 226182-226634,226742-226864,227557-227785,228653-22... 29 4.8
01_06_0677 - 31104736-31104897,31105046-31105234,31105313-311054... 28 6.3
05_05_0148 - 22729469-22730116,22730215-22730589 28 8.3
02_05_0733 + 31309835-31310434,31314138-31314254,31314364-313148... 28 8.3
>07_03_0699 +
20772415-20773450,20789050-20789606,20790971-20791567,
20792258-20792413
Length = 781
Score = 35.1 bits (77), Expect = 0.055
Identities = 33/97 (34%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Frame = -1
Query: 688 HERRHLQRGSHDPEHDDHEGVVGRLPFHLLDDVVEGPHEVLVPRE--GEQRRLDVVHEVH 515
HE L G DP D E + LP H VV L PR G +R
Sbjct: 67 HEVPPLVDGHRDPRRDGPELIAINLPDHAAPAVVVEAGLSLSPRRSYGYLKRCIAACSWS 126
Query: 514 AAPRQLGLRGAPP--PGRQRHAHPRAVPHLAHPEARH 410
+ R R AP P R R HPR P P ARH
Sbjct: 127 SMARWCQARDAPAPHPARGRGVHPRQ-PIAVAPAARH 162
>06_03_1445 -
30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 502 QLGLRGAPPPGRQRHAHPRAVP 437
Q+ RG PPPGRQR PR P
Sbjct: 17 QVPPRGDPPPGRQRQVPPRGDP 38
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 502 QLGLRGAPPPGRQRHAHPRAVP 437
Q+ RG PPPGRQR PR P
Sbjct: 17 QVPPRGDPPPGRQRQVPPRGDP 38
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 502 QLGLRGAPPPGRQRHAHPRAVP 437
Q+ RG PPPGRQR PR P
Sbjct: 17 QVPPRGDPPPGRQRQVPPRGDP 38
>12_01_0779 + 7129879-7130398,7130585-7130664
Length = 199
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 484 APPPGRQRHAHPRAVPHLAHPEARHARRV 398
+PPP R+RH H R HP A V
Sbjct: 20 SPPPPRRRHRHHRRAARRTHPVEAEAEEV 48
>07_01_0312 + 2214050-2214556
Length = 168
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Frame = -2
Query: 552 ASSAGLMSCMRSMP---RRASSACGALRHQAASDTPIHAPYPT----SLTPRHATP 406
AS++GL++ + +M +SS+C A RH A + P P PT +L P A P
Sbjct: 2 ASTSGLLATVLAMAVLLAGSSSSCQAARHLADATPPAAVPVPTVPAVTLPPMPAIP 57
>10_08_0410 -
17716370-17716743,17716839-17716939,17717104-17717300,
17717392-17717677,17717768-17718004,17718226-17718281,
17720042-17721226
Length = 811
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 484 APPPGRQRHAHPRAVPHLAHP 422
APP HAH A+PHLA P
Sbjct: 12 APPHHHHHHAHLPALPHLAAP 32
>07_03_0852 - 22020159-22021388
Length = 409
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -1
Query: 508 PRQLGLRGAPPPGRQRHAHPRAVPHLAHPEARHARR 401
P LG GA P H HP PH + P AR R
Sbjct: 60 PSLLGFCGASPGAGGFHFHPAEPPHPSAPAARGVLR 95
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 365 RSASHSHCLHLYAAGVACLGVSE-VGYGAWMGVSLAA-WWRSAPQAELA 505
R ++ S C ++AG AC G G+W LAA WWR+ Q A
Sbjct: 47 RLSAGSGCGRWWSAGDACWRQRRRCGRGSWRRRLLAAWWWRATAQRRFA 95
>12_01_0346 + 2652181-2653566
Length = 461
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 169 EDLLSSANLSGATHLGSLHRSAMAANPHALRHGRLMD 59
E +++A ++G T + + AA H L HGRL D
Sbjct: 194 EAAMNAARMAGLTTVRIIDEPTAAAVSHGLHHGRLRD 230
>01_01_0030 +
226182-226634,226742-226864,227557-227785,228653-228696
Length = 282
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -1
Query: 517 HAAPRQL-GLRGAPPPGRQRHAHPRAVPHLAHP 422
H AP G APPPG A P A P+ HP
Sbjct: 24 HPAPAPAYGHDSAPPPGPYGQAPPPADPYARHP 56
>01_06_0677 -
31104736-31104897,31105046-31105234,31105313-31105470,
31105558-31105648,31105787-31105961,31106065-31106204,
31106293-31106511,31106589-31106718,31107163-31107229,
31107347-31107441,31107535-31107606,31107681-31107736,
31107995-31108060,31108151-31108264,31108787-31109092
Length = 679
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -1
Query: 484 APPPGRQRHAHPRAVPHL---AHPEARHARRVEMQ 389
APPP R+R A R P + A PEA R E++
Sbjct: 27 APPPARRRRAARRKEPEVAVEAAPEAEEGREEEIE 61
>05_05_0148 - 22729469-22730116,22730215-22730589
Length = 340
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = -1
Query: 184 YIDEYEDLLSSANLSGATHLGSLHRSA------MAANPHALRHGRLMDVLNSN 44
++D+ + S N++G+ S + S + + H+L H RL D+LNSN
Sbjct: 25 FVDDKGSMFSLPNVAGSAPPPSYYSSLPSFYIHRSTSSHSLLHHRLSDLLNSN 77
>02_05_0733 +
31309835-31310434,31314138-31314254,31314364-31314806,
31316831-31317137
Length = 488
Score = 27.9 bits (59), Expect = 8.3
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Frame = -1
Query: 619 RLPFHLLD-DVVEGPHEVLVPREGEQRRLDVVHEVHAAPRQLGLRGAPPPGRQRHA---- 455
RLP H+ + + E +P + E+RRL HE PR + P ++RHA
Sbjct: 282 RLPRHVEEMHHLRHVEERRLPYDHEERRLPYDHEERRRPRYVEDIRHPQFLKERHAITDS 341
Query: 454 --HPRAVPHLAH-PEARHA 407
P H+ H PE +HA
Sbjct: 342 LHDPFRSRHVTHLPELQHA 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,072
Number of Sequences: 37544
Number of extensions: 301546
Number of successful extensions: 1408
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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