Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22a11
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.61 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   1.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   4.3  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   4.3  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   5.7  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   7.5  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   9.9  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    25   9.9  

>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 258 VINDLRAYLRGHIVDVLKCARTGTPLECQ-KHFAQRLELTYQAMNMLISEYLL 413
           VI DL   L G    + +  R   P E Q  HF   L+L Y +  MLI   LL
Sbjct: 454 VIQDLEQLLDGFYNSLPRVFRAEQPGEFQANHFFYNLQLVYYSFRMLIYRPLL 506


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = -1

Query: 219  NFPLNRFALFHFVLQSKLYQHLN*TLPFLSVNSFVKLCVNVH 94
            +FP + F+ F F+L S+ ++ L+ T   + +N F+  C +++
Sbjct: 2303 SFPSDLFSRFQFLLGSQHWESLSNTYWIVQLNIFLSRCFDLN 2344


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = -1

Query: 348 VFGILEEYLFVHILKRRQCAREDKLLNHLLLHFFQINCT*TFENFPLNRFALFHFVLQSK 169
           ++   ++Y ++  L  R  A E     H LL     +   + ++F L+ FAL  F     
Sbjct: 229 IYSFADDYTYLLKLFGRLLAEELVSPKHFLLRIVSFSGDSSLKSFSLHFFALQFFSTSLI 288

Query: 168 LYQHLN*TLPFLSVNSFVKLCVNVH*NL 85
            Y H+        + S+ +L V+   NL
Sbjct: 289 QYTHICRKCVITILQSYQQLIVDQPANL 316


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 516 DYSGLRLKENDVWSIINYLGIKCDSEYASRIVYLYRSREDIPLLMCIIQCNA 671
           D SG +L E+ VW  I+Y+  +   +  S     Y++ E I +   I +C A
Sbjct: 809 DSSGKKLSEDIVWCCISYIIRQTFDKIDSLRGLAYQALEQIRVHYLIRRCEA 860


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 147 FNLNVDRASIEEQNETKQSDSAENFQK 227
           F+ N++     + NET QSD+A ++++
Sbjct: 826 FSTNINETDNYDDNETTQSDTATSYEQ 852


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 336 ECQKHFAQRLELTYQAMNMLISEYLLRLEFNYTLSVFVSEIP 461
           +C  +  ++   T    +  I E L R  F+YTLS    +IP
Sbjct: 810 QCWCNLLEKCISTGDGCSDFIKELLYRRPFSYTLSYVCEQIP 851


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 505 WSISVLANPNTILASGISETNTDSV*LNSRRSKYSDINIFIAW*VSSSLCAKCFWHSRG 329
           W I +L NP  I  S +S+ N+D   + + R  +  I  F+A+   S  C   +   RG
Sbjct: 174 WMI-ILQNPRRIGRSDVSDLNSDPFVMFNHR-HFLPIASFMAFIFPSLFCGLLWGDYRG 230


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 252 NGVINDL-RAYLRGHIVDVLKCARTGTPLECQKHFAQRLELTYQAMNMLISEYLLRLEFN 428
           N VIN L R Y R + VDV K  +    L+ +   A+R   + +++ + I  +    +F+
Sbjct: 265 NRVINYLARTYNRKNNVDVTKDLKAMGKLKREVEKAKRTLSSQKSVRIEIESFFNGQDFS 324

Query: 429 YTLS 440
            TLS
Sbjct: 325 ETLS 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,431
Number of Sequences: 5004
Number of extensions: 63809
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)