Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22a11
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0086 - 17797792-17797810,17798049-17798234,17798319-177984...    29   3.4  
06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,193...    28   7.8  
02_01_0261 + 1731654-1732793                                           28   7.8  

>05_04_0086 -
           17797792-17797810,17798049-17798234,17798319-17798407,
           17798518-17798712,17799364-17799525,17799609-17799681,
           17799929-17799996,17800086-17800133,17800223-17800288,
           17800418-17800488,17800825-17800891
          Length = 347

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 426 NYTLSVFVSEIPLANMVFGFAKTLMDHSSDDYSGLRLKENDVWSIINYLGIKCDSE 593
           ++   V+V  + L ++V+   +   D   D      +  N V   INYLGI   +E
Sbjct: 246 HFPREVWVHNVGLGSLVYSIEQICDDSGEDPTCSRSVSGNSVQDHINYLGISMHAE 301


>06_01_0263 +
           1936927-1936936,1937031-1937305,1937727-1938079,
           1938598-1938715,1938823-1938946,1939389-1939608,
           1939948-1940017,1940083-1940136,1940536-1940604,
           1941138-1941194,1941503-1941575,1942037-1942080,
           1942629-1942751,1943092-1943321,1943552-1943660,
           1944196-1944339,1944443-1944604,1944921-1945197,
           1945326-1945486,1945591-1945782,1946789-1946971,
           1946986-1947063,1947187-1947366,1947476-1947562
          Length = 1130

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/49 (30%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
 Frame = +3

Query: 132 IKMEEFNLNVDRASIEEQNETKQS-DSAENF-QKFMYNLFERNGVINDL 272
           +++E+F+L VD A  ++  + KQS ++ ++F + + YN+ ++  + NDL
Sbjct: 706 VELEDFHLTVDTA--DQDFDLKQSMENLDSFSEAYSYNIVKQMFIENDL 752


>02_01_0261 + 1731654-1732793
          Length = 379

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +2

Query: 278 LSSRAHCRRFKMCTNRYSSRMPKTLCTKT*THLPSYEYVDIRIFTA 415
           L SRA CR ++  T  YS R P  L   T    PSY +      T+
Sbjct: 19  LRSRAVCRTWRRITTAYSRRRPLQLLGNT---DPSYYFTPFNTLTS 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,439,766
Number of Sequences: 37544
Number of extensions: 346423
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)