Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22a11
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.6  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 150 NLNVDRASIEEQNETKQSDSAENFQK 227
           N N D  +  +QN  +Q+D+ +N  K
Sbjct: 444 NQNADNQNANKQNGNRQNDNRQNDNK 469



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 150 NLNVDRASIEEQNETKQSDSAEN 218
           N N ++ +   QN+ +Q+D+ +N
Sbjct: 449 NQNANKQNGNRQNDNRQNDNKQN 471


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 504 HSSDDYSGLRLKENDVWSIINY 569
           H  DDY G  ++    WS I+Y
Sbjct: 144 HIEDDYVGPAMELVYAWSTIDY 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,545
Number of Sequences: 438
Number of extensions: 4562
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)