Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22a10
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0175 + 21350528-21351136                                         31   1.2  
09_02_0070 - 3844270-3846228                                           30   1.5  
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821...    29   4.7  
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770...    29   4.7  
06_02_0094 + 11638563-11638892                                         28   6.2  
03_06_0295 - 32897545-32897805,32897859-32898714,32898843-32899096     28   6.2  
11_01_0446 + 3462820-3464265                                           28   8.3  
03_04_0057 - 16910083-16910223,16911408-16911496,16912029-16912092     28   8.3  

>09_06_0175 + 21350528-21351136
          Length = 202

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 300 RHETSWSPRPGRQVSETDASLRAANNGAVLFLVPAEVKAR 181
           RH    S RPGR    T+   RAA   +V+ L+P  V AR
Sbjct: 7   RHGCRRSRRPGRNALPTNRPARAAEAPSVVVLLPGGVGAR 46


>09_02_0070 - 3844270-3846228
          Length = 652

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 439 ALRSVSIPLPVWSMRALWALPIPGP 513
           +LR++S+ LP  S RAL+ LP+P P
Sbjct: 51  SLRAISVSLPPPSSRALFPLPLPFP 75


>08_02_0952 -
           22981116-22981268,22981930-22981974,22982052-22982153,
           22983262-22983468,22984783-22985042,22985338-22985442,
           22986244-22986247,22986877-22986962,22987022-22987064
          Length = 334

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = -3

Query: 536 HRDHRDHKGPGIGKAHKARMDHTGKGIDTDRKARMDHKARMARTEDTVQGTDRTAHR 366
           H  H+ H      K + A  DH  KG++   K    H   + +T+   +   ++A R
Sbjct: 110 HHHHKRHDRSDKAKLNHAEKDHEDKGVNQAEK-EPSHDGAIEKTDGVTRADSKSAIR 165


>06_03_1122 -
           27775141-27775333,27775414-27775604,27775907-27777099,
           27777206-27777353,27777534-27777609,27777696-27777818,
           27777886-27778050,27778169-27778259,27778580-27778664,
           27778745-27778900,27778992-27779048,27779138-27779236,
           27779381-27779499,27780145-27780202
          Length = 917

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +1

Query: 400 SSVRA-MRALWSMRALRSVSIPLPVW-SMRALWALPIPGPLWSLWSLWSVRTLRTMRPLP 573
           SSVR  M  +  +  L +   P   W S++  W     G      SLW +  L T    P
Sbjct: 314 SSVRRYMGTITGISDLDAARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYP 373

Query: 574 KPVPMPMSKP 603
            P P+ + +P
Sbjct: 374 SPFPLRLKRP 383


>06_02_0094 + 11638563-11638892
          Length = 109

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 482 RMDHTGKGIDTDRKARMDHKARMARTEDTVQGTDRTA 372
           R  H G   D DR+ R    ARM R +   QG  R A
Sbjct: 20  RRQHPGATRDGDRRQRRGSSARMPRKQQQQQGWGRGA 56


>03_06_0295 - 32897545-32897805,32897859-32898714,32898843-32899096
          Length = 456

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 557 VRKVRTDHRDHRDHKGPGIGKAHKARMD 474
           +R+V    R H +HKGPG  +A  AR D
Sbjct: 399 LRRVALYKRGHVEHKGPGAWEAAAARDD 426


>11_01_0446 + 3462820-3464265
          Length = 481

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +1

Query: 355 SMWSLWAVRSVPWTVSSVRAMRALWSMRALRSVSIPLPVWS---MRALWALPIPGPLWSL 525
           + + +WAV  V     S+R  R  +  + +  V +   +WS   +RA  A+ +  PLW +
Sbjct: 96  AFFKVWAVLIVTMQ-DSIRIGRP-YQPKEMTLVDMLTSLWSANQLRAKTAIHLRVPLWLM 153

Query: 526 WSLWSVR 546
           WS+ + R
Sbjct: 154 WSIHASR 160


>03_04_0057 - 16910083-16910223,16911408-16911496,16912029-16912092
          Length = 97

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 466 PVWSMRALWALPIPGPLWSLWSLWSVR 546
           P WS R+ +A  +  PL  +W LW  R
Sbjct: 15  PSWSSRSGFAQKVSAPLEDVWWLWRPR 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,118
Number of Sequences: 37544
Number of extensions: 278271
Number of successful extensions: 1386
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)