Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22a05
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    52   4e-08
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    26   2.0  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   3.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   8.2  

>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 52.0 bits (119), Expect = 4e-08
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +3

Query: 3   KKQIDNLRTNHQGVYVLQDNAFRFLTNFS--NGHQYLEYAPRYVAYTCGLIRGGLANLCI 176
           +K +DNL+TN +G++VL D  F + T  +   G +  +    Y  +  G IRG +     
Sbjct: 85  RKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTEMAQITTPYFYFPSGFIRGVVYTFGY 144

Query: 177 NSIVTAEVQSMPSCKFHI 230
           ++ V A+  ++P+C FH+
Sbjct: 145 SAQVIAQCPNLPTCIFHV 162


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 12  IDNLRTNHQGVYVLQDNAFRFLTNFS 89
           ID   + HQG+Y+  +N  R +T  S
Sbjct: 472 IDGSESKHQGLYIKFENGSRIVTRLS 497


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 103 TWNMLLDMLLTLVGSFEVDWLISVLTVLS 189
           +W+ +      L+ SFE DWL S+   LS
Sbjct: 357 SWSQVTGFRTALLNSFEQDWLASMSWNLS 385


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 203 LNFCCDNTVNTEISQSTSNEPTSVSNISRSIFQVLMTIRKIC*KTECIILKYINSLV 33
           L+FCCDN     +++  S + T VS + R      MT+     K   ++  +I+ ++
Sbjct: 700 LSFCCDN-----LAKIGSGQSTRVSVLLRLFKLAFMTVNVFPEKNAEVLRPHISYII 751


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,225
Number of Sequences: 5004
Number of extensions: 25010
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)