Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22a05
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371 67 5e-12
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 29 2.0
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 29 2.0
04_04_1004 + 30035704-30035934,30036030-30036287,30036382-300364... 29 2.0
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569... 29 2.0
01_05_0645 - 23899579-23904483 29 2.0
04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207... 28 3.5
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 27 4.6
05_02_0077 - 6374282-6374313,6374448-6374524,6375219-6375478,637... 27 6.0
04_01_0365 - 4796780-4796971,4797246-4797327,4797417-4797527,479... 27 6.0
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 27 6.0
>07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371
Length = 185
Score = 67.3 bits (157), Expect = 5e-12
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 17/92 (18%)
Frame = +3
Query: 3 KKQIDNLRTNHQGVYVLQDNAFRFLTNFS-----------------NGHQYLEYAPRYVA 131
KKQIDNL+TNH+G +VLQDN FR+LT S G + +
Sbjct: 79 KKQIDNLKTNHRGTFVLQDNHFRWLTRVSVDPSVESMDATENDSTTLGDSAAQTTSMLLY 138
Query: 132 YTCGLIRGGLANLCINSIVTAEVQSMPSCKFH 227
+ CG+IRG L NL I+ VTA++ ++P+C+ H
Sbjct: 139 FPCGIIRGALTNLGISCSVTADMSNLPACELH 170
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 126 VAYTCGLIRGGLANLCINSIVTAEVQSM 209
+ Y CGL +G +AN C S V E+Q++
Sbjct: 485 ICYKCGL-KGHIANRCFKSKVKKEIQAL 511
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 126 VAYTCGLIRGGLANLCINSIVTAEVQSM 209
+ Y CGL +G +AN C S V E+Q++
Sbjct: 804 ICYKCGL-KGHIANRCFKSKVKKEIQAL 830
>04_04_1004 +
30035704-30035934,30036030-30036287,30036382-30036479,
30036574-30037137,30037232-30037484,30037576-30037758,
30037839-30038465
Length = 737
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 45 YVLQDNAFRFLTNFSNGHQYLEYAPR--YVAYTCGLIRGGLANLCI 176
Y+ + A FLT+F GH Y++ PR ++ G I G N+ +
Sbjct: 499 YISMNQAVSFLTDFKLGH-YMKIPPRSMFLVQFIGTIVAGTVNMSV 543
>03_05_0564 -
25655095-25655106,25656089-25656541,25656886-25656962,
25657058-25657149,25657447-25657553,25657662-25657747,
25657861-25657977,25658205-25658288,25658400-25658479,
25658958-25659132,25659455-25659521,25660175-25660236,
25660369-25660450,25660890-25661312,25661514-25661610,
25662055-25662095,25662673-25662837
Length = 739
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 16 IIFVQTTKEFMYFKIMHSVF*QIFLMVISTWNMLLDMLLTLVGSFEVDWLISVLTVLSQQ 195
+IFV + ++ IM + FL +L ++LTLV E+ +ISV T +S Q
Sbjct: 480 LIFVHVIESLVFVPIMIGIL--FFLFEFYDDQLLAFLVLTLVWLCELFTMISVRTSISMQ 537
Query: 196 KF 201
F
Sbjct: 538 FF 539
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 126 VAYTCGLIRGGLANLCINSIVTAEVQSM 209
+ Y CGL +G +AN C S V E+Q++
Sbjct: 724 ICYKCGL-KGHIANRCFKSKVKKEIQAL 750
>04_04_0843 -
28619064-28619280,28619730-28619825,28620349-28620720,
28620849-28621161,28621183-28621393,28621478-28621681,
28622328-28622726
Length = 603
Score = 27.9 bits (59), Expect = 3.5
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 24 RTNHQGVYVLQDNAFRFL---TNFSNG-HQYLEYAPRYVAYTCGLIRGGLANLC 173
R HQG + + F F T F +G QY+E +YV GL+R GL C
Sbjct: 147 RKGHQGWMKQEGSYFIFPGGGTMFPDGAEQYIEKLAQYVPLKSGLLRTGLDMGC 200
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 111 YAPRYVAYTCGLIRGGLANLCINSIV 188
Y+ RYV C L+ G L+N I S+V
Sbjct: 49 YSTRYVLVNCDLLPGLLSNALIGSLV 74
>05_02_0077 -
6374282-6374313,6374448-6374524,6375219-6375478,
6376036-6376278,6376374-6376391
Length = 209
Score = 27.1 bits (57), Expect = 6.0
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +3
Query: 33 HQGVYV----LQDNAFRFLTNFSNGHQYLEYAPRYVAYTCGLIRGGLANLCINSIVTAE 197
HQG Y+ Q +++F N LE+ P ++ LIR LAN+ I AE
Sbjct: 23 HQGQYIDGLSPQLPPLHLISSFPNHSLLLEHTPLFLIIISSLIREELANMHIYKEQEAE 81
>04_01_0365 -
4796780-4796971,4797246-4797327,4797417-4797527,
4797608-4797859,4797945-4800115
Length = 935
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 188 DNTVNTEISQSTSNEPTSVSNISRSIFQV 102
D+ T+ +Q T+N P+SV ++ +IF V
Sbjct: 341 DSQQPTQSAQQTTNVPSSVGSVQTTIFHV 369
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -3
Query: 248 LCSLNVYMKFT*RHRLNFCCDNTVNTEISQSTSNEPTSVSNISRSIFQVLMTIRKIC 78
L L +Y KF+ N ++T + ++ ++ TS +R +FQ L + K+C
Sbjct: 2056 LLQLKLYDKFS-----NSNAKQEISTIVKENELDQSTSQPKATRHVFQALQYLLKLC 2107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,665,971
Number of Sequences: 37544
Number of extensions: 135698
Number of successful extensions: 309
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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