Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22a01
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313...    34   0.091
02_01_0645 + 4820461-4820736,4821034-4821086,4821670-4821876,482...    31   0.85 
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006...    28   6.0  

>08_01_0356 +
           3131214-3132443,3132584-3132778,3132892-3132972,
           3133324-3133383,3133466-3133560,3133660-3133816,
           3133896-3134021,3134398-3134478,3134557-3134647,
           3134735-3134868,3135068-3135136,3135219-3135308,
           3135405-3135508,3135594-3135762,3136066-3136134
          Length = 916

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +2

Query: 350 MRGKPKKKQLLSINDKALLNKPANERTEQEKKYIYRIIGGLK 475
           +R K KKKQ+ S   KAL      E+ +QE+KY++ I+ G+K
Sbjct: 463 LREKEKKKQMTSEEKKAL----KEEKLKQEEKYMWAIVDGVK 500


>02_01_0645 +
           4820461-4820736,4821034-4821086,4821670-4821876,
           4821975-4822055,4822137-4822302
          Length = 260

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 320 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKK 445
           E  +R  Q+    KP KK+ L + DK +  K  NE  E+ ++
Sbjct: 117 ERRRRWAQRRTSSKPDKKEPLEVEDKDIKQKAENEEDEESEE 158


>08_02_0052 +
           11699468-11699700,11699799-11699916,11699991-11700659,
           11700741-11700842,11700921-11701181,11701838-11702009,
           11702128-11702528,11703171-11703587
          Length = 790

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 296 DSENYEGLENVKRRVQQAMRGKPKKKQLLSINDKALLNK 412
           + +   GL   + R+    R KP++ QLL++  K  LN+
Sbjct: 40  NQDKRNGLSQGENRMDTCTRKKPRRYQLLTMQQKETLNR 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,855,211
Number of Sequences: 37544
Number of extensions: 290250
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)