Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21p24
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical pr...   188   2e-48
AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical...    30   1.0  
U40061-4|AAA81151.3|  239|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    29   2.4  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        29   2.4  
Z82272-7|CAB05217.1|  280|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone...    27   9.5  
AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear recep...    27   9.5  
AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear recep...    27   9.5  

>U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical
           protein B0286.3 protein.
          Length = 423

 Score =  188 bits (459), Expect = 2e-48
 Identities = 87/156 (55%), Positives = 116/156 (74%)
 Frame = +1

Query: 109 KLLIEGKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKS 288
           +LL EGKTKQ+FD+  +  Y L+ +KD +TA + V+ ++LEGK+ I+++T + VFE L+ 
Sbjct: 15  ELLAEGKTKQIFDIKGEKDYVLIRSKDSLTAFNAVRKNELEGKSRIASKTTSNVFEYLQL 74

Query: 289 AGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETFF 468
            G+ T F K  SET F+++KC MIPIEWV RR+ATGSFLKRNPGV EGFRF   K ETFF
Sbjct: 75  LGLPTHFEKSISETEFVARKCTMIPIEWVARRVATGSFLKRNPGVKEGFRFNDLKLETFF 134

Query: 469 KDDANHDPQWSEEQIISAKFNYNGLLIGRDEVDYMR 576
           KDDAN DPQW++EQI+S     + L IGR+E+  M+
Sbjct: 135 KDDANDDPQWTDEQIVSNGLMIDHLKIGREEISLMK 170


>AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical
           protein Y47D7A.16 protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 269 TFAFV*LEIAAFPSKSWALTPSPAVILSLLRSKQYPGWS 153
           TF F    +A F S SW  T S  + LSLL +K   GW+
Sbjct: 3   TFLFTFCLVAIFGSSSWIGTNSVWMELSLLTAKLPEGWN 41


>U40061-4|AAA81151.3|  239|Caenorhabditis elegans Hypothetical
           protein ZK563.5 protein.
          Length = 239

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 205 DGVKAHDLEGKAAISNQTNAKVFEILKSAGIKTAFVKIASETAFLSKKC 351
           D +  HD++   A+    NA+VF  L + GIK A    AS       +C
Sbjct: 51  DAIDKHDVDTLCAMWESWNARVFHSLDTEGIKQAQCYEASAYRLFLVRC 99


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 355  MIPIEWVTRRLATGSFLKRNPGVPE 429
            M+P++W +R  A+ S   R+PG PE
Sbjct: 1278 MVPLDWWSRYYASMSQFHRSPGYPE 1302


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 355  MIPIEWVTRRLATGSFLKRNPGVPE 429
            M+P++W +R  A+ S   R+PG PE
Sbjct: 1278 MVPLDWWSRYYASMSQFHRSPGYPE 1302


>Z82272-7|CAB05217.1|  280|Caenorhabditis elegans Hypothetical
           protein F55G11.10 protein.
          Length = 280

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 164 PGWSGTSNTCLVLPSMRSLPNLYCPTCL 81
           P +SG   T + +P      ++Y PTCL
Sbjct: 73  PNYSGAGGTTVAMPKAFGACDIYKPTCL 100


>U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 44 protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 509 CSSDHWGSWFASSLKNVSCFGGVNLKP 429
           C+ D WG W     ++  CF  + +KP
Sbjct: 68  CTPDEWGRWSCKRCRSDKCF-ALGMKP 93


>AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 509 CSSDHWGSWFASSLKNVSCFGGVNLKP 429
           C+ D WG W     ++  CF  + +KP
Sbjct: 68  CTPDEWGRWSCKRCRSDKCF-ALGMKP 93


>AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 423

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 509 CSSDHWGSWFASSLKNVSCFGGVNLKP 429
           C+ D WG W     ++  CF  + +KP
Sbjct: 63  CTPDEWGRWSCKRCRSDKCF-ALGMKP 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,214,379
Number of Sequences: 27780
Number of extensions: 311147
Number of successful extensions: 869
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)