Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21p23
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-12|CAC35845.1| 236|Caenorhabditis elegans Hypothetical... 91 4e-19
Z67755-1|CAA91754.1| 254|Caenorhabditis elegans Hypothetical pr... 62 2e-10
AL132948-30|CAB61063.1| 365|Caenorhabditis elegans Hypothetical... 27 7.4
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 27 7.4
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 27 9.8
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 9.8
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 9.8
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 27 9.8
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 9.8
>AL132904-12|CAC35845.1| 236|Caenorhabditis elegans Hypothetical
protein Y111B2A.16 protein.
Length = 236
Score = 91.5 bits (217), Expect = 4e-19
Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Frame = +2
Query: 104 DFPVELESQFLLRLPEEPAKALREALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGKV 283
D P + ES +LR+PE+ + + +Q+ + ++ +++D RN VR+ + LL+GK+
Sbjct: 30 DDPPDFESHIVLRVPEDCVGRIEKIIQS-DGKHEEFSLNLNSDARNSTVRIGNQLLNGKI 88
Query: 284 YDLPTIVESLKTIDRKSVYKTADICQIMIC-KDEIDPSSTEEESPAXXXXXXXXXXXXXX 460
DLPTI E KT+D KS+YK AD+ QI++C D I+ ++ E A
Sbjct: 89 LDLPTITEIHKTLDNKSLYKVADVSQILVCTHDSINSIASSSEDAAQKAAAAKAKQWQ-- 146
Query: 461 LWPHGITPPTKN 496
+PHG+TPP K+
Sbjct: 147 -YPHGLTPPMKS 157
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +3
Query: 531 RKCVEAPEIEKEVKRLLR 584
+K ++APE+EKE+KRLLR
Sbjct: 169 KKFMDAPEVEKELKRLLR 186
>Z67755-1|CAA91754.1| 254|Caenorhabditis elegans Hypothetical
protein F54F7.1 protein.
Length = 254
Score = 62.5 bits (145), Expect = 2e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Frame = +2
Query: 116 ELESQFLLRLPEEPAKALREALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGKVYDLP 295
E E +LR+P + + +A+ GE L I D R ++RL + +L K+ DLP
Sbjct: 22 EWEEHLILRVPPDVVNRMEKAVN-GEIDAEELGINFQEDNRTVQIRLGNQILPAKILDLP 80
Query: 296 TIVESLKTIDRKSVYKTADICQIMICK 376
TI E KT+D ++YK D+ Q++IC+
Sbjct: 81 TINEVHKTLDNSTLYKVTDVSQMIICE 107
>AL132948-30|CAB61063.1| 365|Caenorhabditis elegans Hypothetical
protein Y39B6A.39 protein.
Length = 365
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 512 NAFYGHFLLAELYHEATRI 456
N Y H+LL LYHEA ++
Sbjct: 260 NLDYAHYLLTVLYHEAQKV 278
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 113 VELESQFLLRLPEEPAKALREALQTGENFKNRLTIQMDNDM 235
++ E++ LR+P PAK L E ++ +N +Q +D+
Sbjct: 110 LQKENEHRLRIPRRPAKELWENMEDLTKLENEAFLQWRSDL 150
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 317 TIDRKSVYKTA-DICQIMICKDEIDPSSTEEESP 415
TID + KTA D+C + D++D EEESP
Sbjct: 671 TIDMEG--KTAGDMCAVARAMDDLDEECEEEESP 702
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 317 TIDRKSVYKTA-DICQIMICKDEIDPSSTEEESP 415
TID + KTA D+C + D++D EEESP
Sbjct: 671 TIDMEG--KTAGDMCAVARAMDDLDEECEEEESP 702
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 317 TIDRKSVYKTA-DICQIMICKDEIDPSSTEEESP 415
TID + KTA D+C + D++D EEESP
Sbjct: 790 TIDMEG--KTAGDMCAVARAMDDLDEECEEEESP 821
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 317 TIDRKSVYKTA-DICQIMICKDEIDPSSTEEESP 415
TID + KTA D+C + D++D EEESP
Sbjct: 277 TIDMEG--KTAGDMCAVARAMDDLDEECEEEESP 308
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 317 TIDRKSVYKTA-DICQIMICKDEIDPSSTEEESP 415
TID + KTA D+C + D++D EEESP
Sbjct: 790 TIDMEG--KTAGDMCAVARAMDDLDEECEEEESP 821
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,466,380
Number of Sequences: 27780
Number of extensions: 181534
Number of successful extensions: 547
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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