Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21p09
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    24   2.3  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    24   3.0  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    23   5.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    23   7.0  

>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 44  SKPRYLGSWLPDRXGVTSPRC 106
           S P Y  SW+P    + S RC
Sbjct: 282 SHPLYSSSWIPTLHDLVSTRC 302


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 93  VTPXRSGSQLPKYRGFEQLPVL 28
           +    SG Q P Y+G EQ  +L
Sbjct: 106 IVEEHSGQQFPVYKGLEQYTLL 127


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 21  DREGREAAQSRDTWEAGCQTGR 86
           +RE RE   + + WE   +TGR
Sbjct: 116 EREQREYQNNLERWEINPETGR 137


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 86  PXGLAASFPSIAALSSFPSFP 24
           P G+ A FP   A+ + P  P
Sbjct: 532 PPGMPAPFPGYPAVPAMPGIP 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,226
Number of Sequences: 5004
Number of extensions: 3497
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)