Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21p09
         (114 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0241 - 14111286-14111935,14111992-14112115                       28   0.93 
01_06_1134 + 34789510-34789917                                         25   6.5  
07_03_0612 + 19949900-19950052,19950825-19950941,19951037-19951066     25   8.6  
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186...    25   8.6  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    25   8.6  

>01_03_0241 - 14111286-14111935,14111992-14112115
          Length = 257

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 24  REGREAAQSRDTWEAGCQTGRA*XHQGAGG 113
           R G EA  +R  W +G +  RA   +G+GG
Sbjct: 163 RGGEEATAARARWSSGKKAARARWRRGSGG 192


>01_06_1134 + 34789510-34789917
          Length = 135

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 3   PAQL*DDREGREAAQSRDTWEAGCQTGRA*XHQGAG 110
           P++L D  +GRE  +    W+     G    H G G
Sbjct: 67  PSELDDGEKGREDGEMAAEWKGSSGCGGGDRHHGRG 102


>07_03_0612 +
          19949900-19950052,19950825-19950941,19951037-19951066
          Length = 99

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 30 GREAAQSRDTWEAGCQTG 83
          GRE  + R+ W+ GC  G
Sbjct: 6  GREGDEGREGWDVGCLRG 23


>06_03_0927 +
           26015956-26018230,26018323-26018471,26018550-26018618,
           26018701-26018853,26018927-26019090,26019207-26019354,
           26020348-26020470,26020560-26020647,26020781-26020950
          Length = 1112

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 69  QLPKYRGFEQLPVLPD 22
           QLP   GF Q+PV+P+
Sbjct: 396 QLPSTYGFNQIPVIPN 411


>06_01_0520 +
           3761990-3762327,3763304-3763589,3763746-3763820,
           3764013-3764961,3766967-3767064,3768144-3768284,
           3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 39  AAQSRDTWEAGCQTGRA*XHQGAGG 113
           AA+SR TW  G  +G+     G GG
Sbjct: 82  AAESRATWRGGKGSGKGRGGGGGGG 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,161
Number of Sequences: 37544
Number of extensions: 32745
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 14,793,348
effective HSP length: 18
effective length of database: 14,117,556
effective search space used: 268233564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)