Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21p08
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   105   5e-24
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   104   1e-23
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    61   1e-10
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    56   3e-09
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   4.0  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   4.0  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   5.3  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    26   5.3  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.3  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  105 bits (252), Expect = 5e-24
 Identities = 41/76 (53%), Positives = 61/76 (80%)
 Frame = +3

Query: 414 IFNEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIRSVTEDCDNIQ 593
           + +++RTG YR LFH   LITGKEDA++N+ARG++ VG+E++D   ++IR + ++C  +Q
Sbjct: 74  VIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQ 133

Query: 594 GFIVFRAFGGGTGSGF 641
           GF+VF +FGGGTGSGF
Sbjct: 134 GFLVFHSFGGGTGSGF 149



 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
 Frame = +2

Query: 59  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL----AFPDNDNSCGHFFSETGAGK 226
           M+EI+ IH+GQAG Q  NACWELYCLEHGI+P+G +    A  ++D     FFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 227 FVPRVVMIDLEPTPI 271
           +VPR + +DLEP  I
Sbjct: 61  YVPRSIYVDLEPNVI 75


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  104 bits (249), Expect = 1e-23
 Identities = 40/75 (53%), Positives = 60/75 (80%)
 Frame = +3

Query: 414 IFNEIRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIRSVTEDCDNIQ 593
           + +++RTG Y+ LFH   ++TGKEDA++N+ARG++ VG+EM+D  L RIR + ++C  +Q
Sbjct: 78  VIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQ 137

Query: 594 GFIVFRAFGGGTGSG 638
           GF+VF +FGGGTGSG
Sbjct: 138 GFLVFHSFGGGTGSG 152



 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 8/79 (10%)
 Frame = +2

Query: 59  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGV-----LAFPDN---DNSCGHFFSET 214
           M+E++ +H+GQAGVQ  NACWELYCLEHGI PDG          +N   ++  G FFSET
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 215 GAGKFVPRVVMIDLEPTPI 271
           G GKFVPR + +DLEP  I
Sbjct: 61  GQGKFVPRSIYVDLEPNVI 79


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 26/71 (36%), Positives = 44/71 (61%)
 Frame = +3

Query: 426 IRTGVYRQLFHSSSLITGKEDAASNFARGYFGVGREMLDVALNRIRSVTEDCDNIQGFIV 605
           +++G +  LF   ++I G+  A + +A+G++  G E+ D  L+ +R   E CD +QGF +
Sbjct: 76  VKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQL 135

Query: 606 FRAFGGGTGSG 638
             + GGGTGSG
Sbjct: 136 THSLGGGTGSG 146



 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 59  MKEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL--AFPDNDNSCGHFFSETGAGKFV 232
           M+EI+HI  GQ G Q   A W     EHG+   G+              +F+E   GK+V
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 233 PRVVMIDLEP 262
           PR V++DLEP
Sbjct: 61  PRAVLVDLEP 70


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = +2

Query: 62  KEILHIHIGQAGVQAANACWELYCLEHGIRPDGVL-AF-PDNDNSCGHFFSETGAGKFVP 235
           +EI+ +  GQ G Q  +  W+  CLEHGI PDG L +F  +  +    FF ++   +++P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 236 RVVMIDLEP 262
           R ++IDLEP
Sbjct: 63  RAILIDLEP 71



 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +3

Query: 414 IFNEIRTGVYRQLFHSSSLITGKED--AASNFARGYFGVGREMLDVALNRIRSVTEDCDN 587
           + N I +  Y  L++  +++  K    A +N+A GY    R   D+ ++ I    +  D+
Sbjct: 73  VVNNILSDTYGSLYNPENILITKNGGGAGNNWANGYSHAERIFEDI-MDMIDREADGSDS 131

Query: 588 IQGFIVFRAFGGGTGSG 638
           ++GF +  +  GGTGSG
Sbjct: 132 LEGFSLLHSIAGGTGSG 148


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 640 KPEPVPPPNARNTIKP*ILSQSS 572
           +P P PPP+ RN  KP I + SS
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSS 332


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 492 QHLLYQLLEKKNGRAVDIHQF*FH*RFMCFTCENI 388
           QHLLY++L+  +   + + Q   H    CF   NI
Sbjct: 236 QHLLYRMLDVDSSTRITMEQIREHPFLSCFVHPNI 270


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 78  YTLDKPVCKPLTPVGNCIVLNT 143
           Y LD  + + +TP   CIVLNT
Sbjct: 96  YNLDTAIKEVVTPGHTCIVLNT 117


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 586 LSQSSVTDRMRFKATSNI--SRPTPK*PRAKLLAASSLPVIREEEWKS 449
           L +S+ TD  R+    N    R   +  + +L    ++  I+EEEWKS
Sbjct: 26  LQESTETDTSRYMDMENYIQKRVQDELKQLQLRQKKAIDAIQEEEWKS 73


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 98   HRLVQCVCVEFLSFSINHCKFW 33
            H+++QC  V FLSF I+ C  W
Sbjct: 958  HQVLQCKDVSFLSF-ISDCLKW 978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,105
Number of Sequences: 5004
Number of extensions: 57736
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)