Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21p06
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    27   2.8  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    27   2.8  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   4.9  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.5  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    25   8.5  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   8.5  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   8.5  

>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 78  LPLISSSRTNKDFLVHSGYPKPGDI 152
           +PL+ +   NK FL    +P PGD+
Sbjct: 87  IPLVEAVHKNKSFLFIQFWPLPGDL 111


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 334 DTTPRSVTGTSTKG*ATDMTTVLVNKQP 251
           +TTP S+  + +KG A  +T  +VN +P
Sbjct: 65  ETTPISIAASISKGLADRVTVAIVNGEP 92


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +3

Query: 282 SVAHPFVDVPVTDLGVVSGENYADRGHFLINVLFLVIHEDFDRTTLNADLALITT 446
           ++ +  V  PVT L     E Y   GH  I+V      EDF   T N   ++I T
Sbjct: 264 TINNAMVVAPVTLLKNWENEFYNWLGHERIHVYIARCAEDFQEFTSNKTYSIIIT 318


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 405 DRTTLNADLALITTIRDIEFRNKVKPIMLIEPKKPIANKNAFVTGW 542
           D   L   + +I+ I  + +R+K  P+++I P   +AN    +  W
Sbjct: 581 DEMGLGKTVQVISFISVLFYRHKCFPVLVIVPHATVANWERELKKW 626


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 344 VLARHHAKVCYGNVDKRVSHGYD 276
           +L   HA V +  VD R++HGYD
Sbjct: 67  LLENMHASV-FPTVDVRITHGYD 88


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 120 VHSGYPKPGDIPLLNRKIFKGTRV 191
           +H G  KPGD+ + N   + GT +
Sbjct: 821 IHEGKLKPGDVLVTNHPSYGGTHL 844


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 280 YPWLTLLSTFP*QTLAWC 333
           YPW+ L+S F  +T+  C
Sbjct: 243 YPWIALVSAFVAETMTLC 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,174
Number of Sequences: 5004
Number of extensions: 55063
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)